Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1308 ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATAGTACACGTGTCAGCATGGGACGAAAAAGACAGCATCCCAGTACGTTTGGCTACTCTTCGGCGGCTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAAGGGGAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGGTGAAGAGAATTGCATTTTTGATAATAACGACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGATGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCACCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATCGATCATTACCTCCGCAAGATTAACGATGACGAACTCTCTATCAAAATGTCGATCACCCGATCGATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATACCAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1281 46.14 MMGPPPQTAAPSASAIVHVSAWDEKDSIPVRLATLRRLLGSVFRFDWEIGTERGEEKKGKGIFLAMAPSFDLAVSNLLCGEENCIFDNNDDDDETVVEEFLMAPYYLRTRPNRNPHRGGGGDSDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKINDDELSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHTSSEATKRRRLNRPCEVEL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23029273 23033168 - ClG42_08g0130800.10 Clacu08g1308 255650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1308 426 SMART Cyclin_C_2 267 392 IPR004367 -
Clacu08g1308 426 SMART cyclin_7 170 258 IPR013763 -
Clacu08g1308 426 CDD CYCLIN_AtCycD-like_rpt1 164 262 - -
Clacu08g1308 426 Pfam Cyclin, C-terminal domain 267 359 IPR004367 -
Clacu08g1308 426 Gene3D - 137 346 - -
Clacu08g1308 426 PANTHER CYCLINS 137 334 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu08g1308 426 FunFam D2/4-type cyclin 148 263 - -
Clacu08g1308 426 SUPERFAMILY Cyclin-like 250 360 IPR036915 -
Clacu08g1308 426 Pfam Cyclin, N-terminal domain 137 264 IPR006671 -
Clacu08g1308 426 Gene3D - 148 265 - -
Clacu08g1308 426 FunFam D6-type cyclin 264 353 - -
Clacu08g1308 426 CDD CYCLIN_AtCycD-like_rpt2 267 355 - -
Clacu08g1308 426 SUPERFAMILY Cyclin-like 129 264 IPR036915 -
Clacu08g1308 426 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0668 Clacu-Chr2:6681708 Clacu08g1308 Clacu-Chr8:23029273 2.90E-33 dispersed
Clacu02g1186 Clacu-Chr2:23924100 Clacu08g1308 Clacu-Chr8:23029273 3.30E-30 dispersed
Clacu05g2220 Clacu-Chr5:30740319 Clacu08g1308 Clacu-Chr8:23029273 2.50E-34 dispersed
Clacu08g1308 Clacu-Chr8:23029273 Clacu10g1013 Clacu-Chr10:21768793 7.30E-49 dispersed
Clacu05g2703 Clacu-Chr5:34600131 Clacu08g1308 Clacu-Chr8:23029273 1.10E-45 transposed
Clacu09g2091 Clacu-Chr9:35717818 Clacu08g1308 Clacu-Chr8:23029273 8.30E-48 transposed
Clacu01g1915 Clacu-Chr1:31254027 Clacu08g1308 Clacu-Chr8:23029273 1.90E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1308 K18810 - csv:101216206 628.246