Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g1308 | ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATAGTACACGTGTCAGCATGGGACGAAAAAGACAGCATCCCAGTACGTTTGGCTACTCTTCGGCGGCTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAAGGGGAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGGTGAAGAGAATTGCATTTTTGATAATAACGACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGATGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCACCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATCGATCATTACCTCCGCAAGATTAACGATGACGAACTCTCTATCAAAATGTCGATCACCCGATCGATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATACCAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG | 1281 | 46.14 | MMGPPPQTAAPSASAIVHVSAWDEKDSIPVRLATLRRLLGSVFRFDWEIGTERGEEKKGKGIFLAMAPSFDLAVSNLLCGEENCIFDNNDDDDETVVEEFLMAPYYLRTRPNRNPHRGGGGDSDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKINDDELSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHTSSEATKRRRLNRPCEVEL | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23029273 | 23033168 | - | ClG42_08g0130800.10 | Clacu08g1308 | 255650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g1308 | 426 | SMART | Cyclin_C_2 | 267 | 392 | IPR004367 | - | |
Clacu08g1308 | 426 | SMART | cyclin_7 | 170 | 258 | IPR013763 | - | |
Clacu08g1308 | 426 | CDD | CYCLIN_AtCycD-like_rpt1 | 164 | 262 | - | - | |
Clacu08g1308 | 426 | Pfam | Cyclin, C-terminal domain | 267 | 359 | IPR004367 | - | |
Clacu08g1308 | 426 | Gene3D | - | 137 | 346 | - | - | |
Clacu08g1308 | 426 | PANTHER | CYCLINS | 137 | 334 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Clacu08g1308 | 426 | FunFam | D2/4-type cyclin | 148 | 263 | - | - | |
Clacu08g1308 | 426 | SUPERFAMILY | Cyclin-like | 250 | 360 | IPR036915 | - | |
Clacu08g1308 | 426 | Pfam | Cyclin, N-terminal domain | 137 | 264 | IPR006671 | - | |
Clacu08g1308 | 426 | Gene3D | - | 148 | 265 | - | - | |
Clacu08g1308 | 426 | FunFam | D6-type cyclin | 264 | 353 | - | - | |
Clacu08g1308 | 426 | CDD | CYCLIN_AtCycD-like_rpt2 | 267 | 355 | - | - | |
Clacu08g1308 | 426 | SUPERFAMILY | Cyclin-like | 129 | 264 | IPR036915 | - | |
Clacu08g1308 | 426 | MobiDBLite | consensus disorder prediction | 400 | 420 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0668 | Clacu-Chr2:6681708 | Clacu08g1308 | Clacu-Chr8:23029273 | 2.90E-33 | dispersed | |
Clacu02g1186 | Clacu-Chr2:23924100 | Clacu08g1308 | Clacu-Chr8:23029273 | 3.30E-30 | dispersed | |
Clacu05g2220 | Clacu-Chr5:30740319 | Clacu08g1308 | Clacu-Chr8:23029273 | 2.50E-34 | dispersed | |
Clacu08g1308 | Clacu-Chr8:23029273 | Clacu10g1013 | Clacu-Chr10:21768793 | 7.30E-49 | dispersed | |
Clacu05g2703 | Clacu-Chr5:34600131 | Clacu08g1308 | Clacu-Chr8:23029273 | 1.10E-45 | transposed | |
Clacu09g2091 | Clacu-Chr9:35717818 | Clacu08g1308 | Clacu-Chr8:23029273 | 8.30E-48 | transposed | |
Clacu01g1915 | Clacu-Chr1:31254027 | Clacu08g1308 | Clacu-Chr8:23029273 | 1.90E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g1308 | K18810 | - | csv:101216206 | 628.246 |