Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1310 ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGATTGGAATTCGATACAATGGAGTCGACAATGTGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTGCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTACATGGGTGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACGTTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGCGTACGGCCCGGCGACTACAATCTGTATGCATGGGTTCCCGGCTTTATTGGAGATTATCGTTACGACGCTCTCATCAACATTACAGAAGGCAGCGAGATAGACATGGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTATGGGAAATAGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGACTATGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACTGTTGGTGTCAGTGACTACACTAAGGATTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAACGTCGACAACGAAGCAACATACAAGCTTTGGGTCGCATTGGCCTCCGCTTCACTTGCAGAATTACAGGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGCGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGTCCTTTTCAAGCGATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCCTTGGAATAA 1926 48.65 MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVIGIRYNGVDNVLEVLNDESNRGYWDLVWNSSATTTGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGNISGRLFVKDSYVSEDLIPADGAFVGLATPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSEIDMDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENGTYKGTTWQVKFKLDNVDNEATYKLWVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHPLE 641
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 23054904 23061194 + ClG42_08g0131000.10 Clacu08g1310 255652
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1310 641 CDD RGL4_N 8 293 - -
Clacu08g1310 641 Gene3D - 5 301 IPR014718 GO:0030246(InterPro)
Clacu08g1310 641 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Clacu08g1310 641 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Clacu08g1310 641 SUPERFAMILY Starch-binding domain-like 330 430 IPR013784 GO:0030246(InterPro)
Clacu08g1310 641 FunFam Rhamnogalacturonate lyase B 329 428 - -
Clacu08g1310 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 632 IPR051850 -
Clacu08g1310 641 Gene3D - 329 429 - -
Clacu08g1310 641 Gene3D - 439 629 - -
Clacu08g1310 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Clacu08g1310 641 SUPERFAMILY Galactose mutarotase-like 11 292 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Clacu08g1310 641 CDD RGL4_M 332 431 IPR029413 -
Clacu08g1310 641 CDD RGL4_C 443 629 - -
Clacu08g1310 641 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1310 Clacu-Chr8:23054904 Clacu11g1655 Clacu-Chr11:27769025 6.00E-281 dispersed
Clacu01g2263 Clacu-Chr1:33712652 Clacu08g1310 Clacu-Chr8:23054904 2.50E-202 transposed
Clacu01g1892 Clacu-Chr1:31065805 Clacu08g1310 Clacu-Chr8:23054904 5.30E-214 wgd
Clacu11g1654 Clacu-Chr11:27746002 Clacu08g1310 Clacu-Chr8:23054904 1.60E-264 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1310 K18195 - csv:101215720 1244.95