Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1315 ATGAAACTTTCCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGACTGGGACGAACTCAGACGACTATCAATGGAAGAGGAATCGACGACATAGTTGGGCGTGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACGAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCCTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 2445 48.88 MKLSSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRLGRTQTTINGRGIDDIVGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHSHNPLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKKAIMAVSGFIQSGPRFVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23138150 23165445 - ClG42_08g0131500.10 Clacu08g1315 255657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1315 814 ProSiteProfiles Tify domain profile. 228 263 IPR010399 -
Clacu08g1315 814 SMART GATA_3 660 713 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 SMART GATA_3 357 410 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 CDD ZnF_GATA 665 709 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 ProSiteProfiles GATA-type zinc finger domain profile. 357 416 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 MobiDBLite consensus disorder prediction 481 503 - -
Clacu08g1315 814 Pfam CCT motif 295 337 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 Pfam CCT motif 595 636 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 MobiDBLite consensus disorder prediction 284 299 - -
Clacu08g1315 814 Gene3D - 658 716 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu08g1315 814 Gene3D - 353 412 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu08g1315 814 Pfam tify domain 530 561 IPR010399 -
Clacu08g1315 814 Pfam tify domain 231 262 IPR010399 -
Clacu08g1315 814 MobiDBLite consensus disorder prediction 736 814 - -
Clacu08g1315 814 MobiDBLite consensus disorder prediction 328 365 - -
Clacu08g1315 814 PANTHER GATA TRANSCRIPTION FACTOR 28 479 751 IPR045280 GO:0006355(InterPro)
Clacu08g1315 814 CDD ZnF_GATA 362 409 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 SMART tify_2 527 562 IPR010399 -
Clacu08g1315 814 SMART tify_2 228 263 IPR010399 -
Clacu08g1315 814 MobiDBLite consensus disorder prediction 284 303 - -
Clacu08g1315 814 ProSiteProfiles CCT domain profile. 595 637 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 Pfam GATA zinc finger 363 399 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 Pfam GATA zinc finger 666 702 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 ProSiteProfiles GATA-type zinc finger domain profile. 660 708 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 MobiDBLite consensus disorder prediction 405 425 - -
Clacu08g1315 814 ProSitePatterns GATA-type zinc finger domain. 363 390 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 ProSiteProfiles Tify domain profile. 527 562 IPR010399 -
Clacu08g1315 814 ProSitePatterns GATA-type zinc finger domain. 666 693 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 661 710 - -
Clacu08g1315 814 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 357 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1315 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1315 Clacu-Chr8:23138150 Clacu09g1682 Clacu-Chr9:30012401 2.60E-63 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g0166 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Clacu08g1315 . 204 427 Tify Gene Family AT4G24470 58.3 8.4e-66 247.7
Clacu09g1682 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Clacu09g0166 . 1 265 Tify Gene Family AT1G51600 59.7 2.6e-80 295.8
Clacu09g1682 . 86 303 Tify Gene Family AT1G51600 54.4 6.6e-52 201.4
Clacu08g1315 . 533 708 Tify Gene Family AT1G51600 59.0 7.3e-51 198.0
Clacu08g1315 . 204 427 Tify Gene Family AT4G24470 58.3 8.4e-66 247.7
Clacu09g1682 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Clacu09g0166 . 1 265 Tify Gene Family AT1G51600 59.7 2.6e-80 295.8
Clacu09g1682 . 86 303 Tify Gene Family AT1G51600 54.4 6.6e-52 201.4
Clacu08g1315 . 533 708 Tify Gene Family AT1G51600 59.0 7.3e-51 198.0
Clacu09g0166 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Clacu06g0637 . 1 180 Tify Gene Family AT4G14713 53.1 1.0e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48186 PF06203 CCT 3.90E-13 CL0281 Clacu TF