Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1315 ATGAAACTTTCCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGACTGGGACGAACTCAGACGACTATCAATGGAAGAGGAATCGACGACATAGTTGGGCGTGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACGAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCCTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 2445 48.88 MKLSSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRLGRTQTTINGRGIDDIVGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHSHNPLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKKAIMAVSGFIQSGPRFVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23138150 23165445 - ClG42_08g0131500.10 Clacu08g1315 255657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1315 814 ProSiteProfiles Tify domain profile. 228 263 IPR010399 -
Clacu08g1315 814 SMART GATA_3 660 713 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 SMART GATA_3 357 410 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 CDD ZnF_GATA 665 709 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 ProSiteProfiles GATA-type zinc finger domain profile. 357 416 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 MobiDBLite consensus disorder prediction 481 503 - -
Clacu08g1315 814 Pfam CCT motif 295 337 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 Pfam CCT motif 595 636 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 MobiDBLite consensus disorder prediction 284 299 - -
Clacu08g1315 814 Gene3D - 658 716 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu08g1315 814 Gene3D - 353 412 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu08g1315 814 Pfam tify domain 530 561 IPR010399 -
Clacu08g1315 814 Pfam tify domain 231 262 IPR010399 -
Clacu08g1315 814 MobiDBLite consensus disorder prediction 736 814 - -
Clacu08g1315 814 MobiDBLite consensus disorder prediction 328 365 - -
Clacu08g1315 814 PANTHER GATA TRANSCRIPTION FACTOR 28 479 751 IPR045280 GO:0006355(InterPro)
Clacu08g1315 814 CDD ZnF_GATA 362 409 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 SMART tify_2 527 562 IPR010399 -
Clacu08g1315 814 SMART tify_2 228 263 IPR010399 -
Clacu08g1315 814 MobiDBLite consensus disorder prediction 284 303 - -
Clacu08g1315 814 ProSiteProfiles CCT domain profile. 595 637 IPR010402 GO:0005515(InterPro)
Clacu08g1315 814 Pfam GATA zinc finger 363 399 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 Pfam GATA zinc finger 666 702 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 ProSiteProfiles GATA-type zinc finger domain profile. 660 708 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 MobiDBLite consensus disorder prediction 405 425 - -
Clacu08g1315 814 ProSitePatterns GATA-type zinc finger domain. 363 390 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 ProSiteProfiles Tify domain profile. 527 562 IPR010399 -
Clacu08g1315 814 ProSitePatterns GATA-type zinc finger domain. 666 693 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1315 814 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 661 710 - -
Clacu08g1315 814 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 357 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1315 Clacu-Chr8:23138150 Clacu09g1682 Clacu-Chr9:30012401 2.60E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48186 PF06203 CCT 3.90E-13 CL0281 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1315 - - - 0.0