Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1317 ATGCCAGCCAAGGACAACTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAAGTGGGGCTTCCCACACCTGTATATGAGACTATCAAAGAAGGTCCTTCCCATGAGCCAACCTTTCATTCTACGGTGATTGTTAATGATGTTAGATATGATTCTCTACCTGGATTTTCCAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTTATGGAGCTGTCGAAATCTAGTGATCTTAATCCACATGTCTCTCTACCTGTGCATGAAACAGGACTGTGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTTTATCAATGCCAAAAAGACGATGGCCCAGGCAGAGGACCCCTTTTCTCATGTACAGTAGAAATTGGAGGGATCCGCTACATTGGTGCTGTAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCAATCCAGTCTTCCCCCACTTCATTGTCAGCGAAATCTGTCAATCAAGTTCAGCTCACCGTGATCCCATCGTGCAAGCAAAAAGAAGCACCGGATTCCTCAGTTAAACCAAAGACAACTGGAGCACCGAGATCAAAGCGAGGTCGATTTAAGAGAGGAGGAGTGATAAGGAAGAGAGGCTTCAGAAATGTACTCAATTACATTGATACATCAACCTTGGAACCTTTTAAAACTGGGGTCGTCCAGGGGCCTGGTTTTGGGGAACCTGTTGATTTAGCGAAAGACCTAAGCTCAAGTAACAATGACGTAGTGGTCTCTAACGTCCAAACTGACATGCCTCTGCTCCTAAATGGTAATTTCGAAAATGGTTGTTCGGGTACTTTCAGTTCTGATCAAGTAAACTGTTCAACCTCTGAGGTTATGAGTTTTCCTCTTGCCACCGAAGTTCAACCAACTTGTGGCGAAGTGGCTTCTGGAGTAACAGGGGAGCTTCAGTGA 996 44.08 MPAKDNFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALMELSKSSDLNPHVSLPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGPLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQSSPTSLSAKSVNQVQLTVIPSCKQKEAPDSSVKPKTTGAPRSKRGRFKRGGVIRKRGFRNVLNYIDTSTLEPFKTGVVQGPGFGEPVDLAKDLSSSNNDVVVSNVQTDMPLLLNGNFENGCSGTFSSDQVNCSTSEVMSFPLATEVQPTCGEVASGVTGELQ 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23170865 23174242 + ClG42_08g0131700.10 Clacu08g1317 255659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1317 331 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Clacu08g1317 331 Gene3D - 98 170 - -
Clacu08g1317 331 SMART DRBM_3 102 169 IPR014720 -
Clacu08g1317 331 SMART DRBM_3 16 83 IPR014720 -
Clacu08g1317 331 CDD DSRM_AtDRB-like_rpt2 100 169 IPR044451 GO:0003725(InterPro)
Clacu08g1317 331 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Clacu08g1317 331 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Clacu08g1317 331 Pfam Double-stranded RNA binding motif 17 81 IPR014720 -
Clacu08g1317 331 SUPERFAMILY dsRNA-binding domain-like 103 172 - -
Clacu08g1317 331 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725(InterPro)
Clacu08g1317 331 MobiDBLite consensus disorder prediction 194 216 - -
Clacu08g1317 331 PANTHER RIBONUCLEASE III 8 218 - GO:0003725(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0006396(PANTHER)|GO:0010468(PANTHER)
Clacu08g1317 331 FunFam double-stranded RNA-binding protein 1 13 89 - -
Clacu08g1317 331 SUPERFAMILY dsRNA-binding domain-like 16 84 - -
Clacu08g1317 331 Gene3D - 16 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1317 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1317 Clacu-Chr8:23170865 Clacu10g1353 Clacu-Chr10:26571020 1.20E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g526 . . Bda01g00907 . . . . . . . . . . . . . . . . . . . . . Cla08g01158 Cam08g1618 Cec08g1193 Cco08g1316 Clacu08g1317 . Cre08g1102 Cone4ag1293 Cone7ag0862 . . . . . Cme03g01812 . . . . Bpe02g01145 . . . . . . . Cma05g00538 Car05g00485 . Cpe11g00474 . . . . . . . . . . . . . . . . . Chy03g01315 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012839 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 27