Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1323 ATGCTCAATTCAACAATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTATCAAGGGAAAGACTCGTGTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCTGTAAGTCTTCAGCTCTTACGGAGTGTAAGTCGACCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCCGTTCTAAACTCTGCAGCTGTAGTTTTGACAAGATCTTATGATGCTTTACGAGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATACTATTTCTTCATGAGCCGGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACCGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTCGCTTCTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTAACAGCTGGGGGTCTCGGAACCGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTCGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCATGTTGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACGGTTAGTATTGTGAGGAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTCTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCACCATAGGGCCCGCCTCGCCACCCCCATTCGCACTGTGCAGAAAATATATGGCGAAGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTTCCAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCTAACGAAGAAAAGGAAGCGAAACAAGAGGCAGTCTCAATGTCAGGGACAAAAGCCCCCGACACAGCTGGATCAACATCAAATCTAGCAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTCATAGGAATGAATTCCAAGGACAATATGCCACGAGGGACTCCGCCCAAAAGATCTCCCTCAGCTTCCAGTCCTAGCAGTGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCAAGACGGCGAGAAGACCTCTGCATCGCCATCAGTGGCGAGGGCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCGTTAGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCCGGCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 2004 43.31 MLNSTMVHPGSTQFSHKLGIQSVHGCNKLHISIKGKTRVHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSNRPLLLIEPSYKVNGDDKTKVSSRPTRSSNEEKEAKQEAVSMSGTKAPDTAGSTSNLASNEIKGEKKDVIGMNSKDNMPRGTPPKRSPSASSPSSEKADIPSSSSQNKQDGEKTSASPSVARAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPGNSKDMKDGQMPAVPGATKND 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23221789 23227305 + ClG42_08g0132300.10 Clacu08g1323 255665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1323 667 Gene3D - 303 358 IPR023408 -
Clacu08g1323 667 Pfam Mechanosensitive ion channel, beta-domain 287 357 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g1323 667 SUPERFAMILY Sm-like ribonucleoproteins 287 357 IPR010920 -
Clacu08g1323 667 Gene3D - 198 301 - -
Clacu08g1323 667 MobiDBLite consensus disorder prediction 526 543 - -
Clacu08g1323 667 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 6 654 IPR045042 -
Clacu08g1323 667 MobiDBLite consensus disorder prediction 497 522 - -
Clacu08g1323 667 MobiDBLite consensus disorder prediction 567 599 - -
Clacu08g1323 667 MobiDBLite consensus disorder prediction 497 667 - -
Clacu08g1323 667 MobiDBLite consensus disorder prediction 623 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1323 Clacu-Chr8:23221789 Clacu10g0760 Clacu-Chr10:11110174 7.10E-184 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1323 K22047 - csv:101213477 1201.81