Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1325 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGCGACGCCGAAGTAGCGCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAACTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGTAATCTTGGAAAGTTGGAATATCCATCCCTTGAGCTGCAGCTTGAAAATGAAAATAGCAATCACGTCCGATTGAACAAGGAAGTTGCAGATATGAGCCAACAACTTAGGCAGATGAGGGGAGAAGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACACGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACTTCCCTCAAATTAGGATTATTTGTGGTTGCAAGCAAAGGCGTGAGGGAGCATCCAGCTGCTCATTGGTTCCATTTTGAGCAACCCAAGTGGGCCAAAAGCTTTGACACAAATCTGTGTTTGGTAAAACTCTGGCTTCTCCTCCCTGTTCATCGGAGCTTGCGCTGCGCTCTGATTTACGAATGTCAACACACTGAGTTCCTTTTGACTCGTTTTCAACTCACCGATCTTCCCTTCATCCCTCTCTTCGCCATGAAGAACGCCCCCGTCAAAGGCCTTGAAGTTTTCGATTTCACCGAAGAAGACGAACTTCCTGAATTGATCTCCGAGAAGCGCCTCAGCAAATTTAAAAACCCTAATCTCGAATCTAACGCTGTTTTGAAGTATGAATTTCTCGAATGTGGGAAGGAGATTGAAAATCCACACATGGATGTTGATTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATAATCCTTTGGGCACAACTAAAGAGCAACAAATCATGGAAGAAGAGAAATATCAATTGGATGCCAATGCAAAATCAGAAGTGAAATGCCATTTGCAAGATATGATCGTGCAAGTAGATAATCATGTGACACAAAGCCTTTGCTCTCAACTTGGGAAAATTGGATCTAGCTCTCAAAGTCCTACCCAGGGGTTAACTTGCACTCTTCCTGAGTTTACTGCTGAAAGTGAGCAAGTTGATGCACTGTCAGATCCTAATGGAAGCATAAAAGGGAGTTCTCCAGTGAGCCCTCCTTCAGAAACTGTAGAGGATGGTGTTTTGTTGAACGGGAAGTCTTCAGATAATTGCTCATCTGATAATGAAAAGGATGATCTTAGTGACGAGGTTGTCCTTTATCCCGATTATATTGTATGTGGAGATTTTTACTGTGCCAGTCCCTCCTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTTTGCTGATTATGGAAGCAATGAGTACCTTAACCTTGAATGGAGAGTCGACGATGTCATTCATATTGAGTGCCAGTGCTTTCAAAGGGTTGAATATGTGATGATCAAGCTCCATGTTATCTCAAAAGATGCTGGTGAATGTGACAATGCGTGTGACAGTTCTGGCATTAAGGAAGTAAAGATTGTTCTTGTTGATTCTTACTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTCGATGTGGGAATAGGATCCGATGATGATGATTTAAGTGGGCAGAGACACTATTTTCCCAACTTTGATGAGCCTTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCTGTTTCCATTAGTAAGAGGGATGTTGACTTGCTGCAACCAGAGACGTTTGTCAATGACACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGATCCCAAGGAGAAGCATAGATTTCACTTCTTCAATAGTTTTTTCTTTAGGAAGCTGGCAGACCTTGATAAAGATCCATCAAGTGCTTCAGATGGCAGAGCTGCCTTTCTACGTGTTCGGAAATGGACACGGAAAGTGGATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAATCTTCATTGGAGCTTAATGGTCATATGCCACCCTGGCGAAGTGGCTAGATATAGTGATGAAGACCTGATGAAGTCAATGAAAGTACCGTGTATATTGCATATGGATTCTATTAAAGGAAGTCACGCAGGTCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAAAGAGAGAAACAAGGAGACACCTGAAGATATTTCAACAAAATTTAAGAACCTTCGGTTCCTCCCACTTGAGCTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTGTTCTTGCTCCACTATCTAGAACTTTTTCTGGCAGAAGCTCCTCTTGATTTTAGCCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCCTACCTCAAGCGAACTTTAATACAGAGATTAATTTTCGAAATCCTTGATAACCGATCTCGAGAAATGTCCGCAGCTGCTTGCAGTGATGAACTCTTGTCTAAATTTCCATCCAATAATGAGGATGAAACTGGTCTGGAGCTTCTTCCCGAAAGAGGAAGCCCAGCCGTGGCACGCAATCACAATTTGCCAAGCTCACAAGCTGTTGATGGGATTGAAATTACTCTATTATCTGAATCTTCCAGTAGACACAACCACTTCATTGACGGTTCTGGCTTGGTTGTCAGAGAATTATTTGAACCAGGCGCCTCTAATGGACCGTTACTTGGACACTACCAATCTTTTGGTCAAACATCATCGTATTTTGATTCAAATGGTACTGTGCTGGAGGACACAGATGCAGAAACTGGAGACCGTTTCATGTACTTACCTCCACAACAGGATGGTTTGCAGCCAATTGATGCAATGACATCTCAAGCTTGTCGTTTTCCGTGTTCATCGAGAGGCCTTGAATCGGACCCTGCTTTTGACTTATGCATGTCTATTCAACAAGAGCAAGGCGGGGGCATTGCCTCGTCCCCGACAGATGACTTGGAAGACGTGGGAATCATTGAACATTCCAATGTTAGGGAAGCAAGTCCTGGTAACACAGAAGAAAGGAACGGAAAAGGGCCTCTACCGATCGAGAAGGAGAACCTGGAACCTGTAGCAGAATGCCCTACTTCTGCTGCTACCACGAAGAAAGATTTTGATGCCATTGTCTTCTCTCAAGATGACACTAACGAGGAAAATAACGGATCTGATAATCCCATGTGTAAAGAGACTCTCGTTGCACTGCCGCATCTAGATAAAGATATAACAACCAAAACAGACGTCGAACATGATGATGTGCTGGTGGTTGCTTCGGTTACTGAGGTGGACTTAGACGAGCAACCCCCTGCCAAGAAACCAAGGCGTTCGTCATACCACGAAGAAGCGAGTAACAACGGTGTCAGAGAAGGTTTGTTGGATGATGCAGAGTTATAA 3690 43.31 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSNSSVKDVIARYNLHSSNLGKLEYPSLELQLENENSNHVRLNKEVADMSQQLRQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGLFVVASKGVREHPAAHWFHFEQPKWAKSFDTNLCLVKLWLLLPVHRSLRCALIYECQHTEFLLTRFQLTDLPFIPLFAMKNAPVKGLEVFDFTEEDELPELISEKRLSKFKNPNLESNAVLKYEFLECGKEIENPHMDVDLDECNRGCDNGISHNPLGTTKEQQIMEEEKYQLDANAKSEVKCHLQDMIVQVDNHVTQSLCSQLGKIGSSSQSPTQGLTCTLPEFTAESEQVDALSDPNGSIKGSSPVSPPSETVEDGVLLNGKSSDNCSSDNEKDDLSDEVVLYPDYIVCGDFYCASPSLTFSHNGIKINGFADYGSNEYLNLEWRVDDVIHIECQCFQRVEYVMIKLHVISKDAGECDNACDSSGIKEVKIVLVDSYWSEKQQKIRSLDSRYMAIWNMSLDVGIGSDDDDLSGQRHYFPNFDEPFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGRAAFLRVRKWTRKVDLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDEDLMKSMKVPCILHMDSIKGSHAGLKNLIQSYLLEEWKERNKETPEDISTKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILDNRSREMSAAACSDELLSKFPSNNEDETGLELLPERGSPAVARNHNLPSSQAVDGIEITLLSESSSRHNHFIDGSGLVVRELFEPGASNGPLLGHYQSFGQTSSYFDSNGTVLEDTDAETGDRFMYLPPQQDGLQPIDAMTSQACRFPCSSRGLESDPAFDLCMSIQQEQGGGIASSPTDDLEDVGIIEHSNVREASPGNTEERNGKGPLPIEKENLEPVAECPTSAATTKKDFDAIVFSQDDTNEENNGSDNPMCKETLVALPHLDKDITTKTDVEHDDVLVVASVTEVDLDEQPPAKKPRRSSYHEEASNNGVREGLLDDAEL 1229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23236709 23254653 - ClG42_08g0132500.10 Clacu08g1325 255667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1325 1229 Pfam Ulp1 protease family, C-terminal catalytic domain 680 881 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Clacu08g1325 1229 MobiDBLite consensus disorder prediction 1196 1229 - -
Clacu08g1325 1229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu08g1325 1229 MobiDBLite consensus disorder prediction 1197 1214 - -
Clacu08g1325 1229 Coils Coil 81 115 - -
Clacu08g1325 1229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 SUPERFAMILY Cysteine proteinases 657 902 IPR038765 -
Clacu08g1325 1229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 ProSiteProfiles Ubiquitin-like protease family profile. 665 859 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Clacu08g1325 1229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 304 1161 - -
Clacu08g1325 1229 MobiDBLite consensus disorder prediction 455 501 - -
Clacu08g1325 1229 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g1325 1229 FunFam Transcription factor, MADS-box 13 83 - -
Clacu08g1325 1229 Pfam K-box region 88 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g1325 1229 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1325 1229 Coils Coil 151 178 - -
Clacu08g1325 1229 Gene3D - 705 836 - -
Clacu08g1325 1229 MobiDBLite consensus disorder prediction 455 477 - -
Clacu08g1325 1229 FunFam Probable ubiquitin-like-specific protease 2B 705 836 - -
Clacu08g1325 1229 Gene3D - 657 901 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1277 Clacu-Chr4:26822837 Clacu08g1325 Clacu-Chr8:23236709 1.90E-13 dispersed
Clacu08g1325 Clacu-Chr8:23236709 Clacu10g0966 Clacu-Chr10:20956602 1.70E-45 dispersed
Clacu04g1051 Clacu-Chr4:24761765 Clacu08g1325 Clacu-Chr8:23236709 5.60E-12 transposed
Clacu05g2728 Clacu-Chr5:34792235 Clacu08g1325 Clacu-Chr8:23236709 4.30E-33 transposed
Clacu06g0497 Clacu-Chr6:5757337 Clacu08g1325 Clacu-Chr8:23236709 7.10E-19 transposed
Clacu09g1675 Clacu-Chr9:29859088 Clacu08g1325 Clacu-Chr8:23236709 1.60E-101 transposed
Clacu01g1891 Clacu-Chr1:31052607 Clacu08g1325 Clacu-Chr8:23236709 1.10E-28 wgd
Clacu11g1657 Clacu-Chr11:27790692 Clacu08g1325 Clacu-Chr8:23236709 6.50E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48188 PF02902 Peptidase_C48 1.10E-39 CL0125 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1325 K08596 - csv:101206097 1556.19