Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g1329 | ATGAAAGGCGATTTTGCTCATCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTTCCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCGCCGCCGTGCCTTCCCCCTTTAAACACCGCCCGGAGCTAACTTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCAAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTCACGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTTAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACACCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTCTTCCCTCAAACCACGCCGTTACCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGCGGTTTGGTCGCCGGTGCTTTAATTGCCGCCGGTACCGTTTTTGTCGTTGCCTCGTCGTTCAATAATCCGCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGCGGTGGAGATAGTAGCGGGCACGGGCAGGGGCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTATAGTTGCCACGCTCCGTCCGACGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGCCGTACTAA | 876 | 56.62 | MKGDFAHPKSKTSNMLSKFHLSAHPFSHHPPPQQPADEPTAAVPSPFKHRPELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQTTPLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGQGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPPY | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23297496 | 23298371 | + | ClG42_08g0132900.10 | Clacu08g1329 | 255671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g1329 | 291 | FunFam | AT-hook motif nuclear-localized protein | 94 | 226 | - | - | |
Clacu08g1329 | 291 | ProSiteProfiles | PPC domain profile profile. | 90 | 228 | IPR005175 | - | |
Clacu08g1329 | 291 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 92 | 219 | - | - | |
Clacu08g1329 | 291 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 94 | 208 | IPR005175 | - | |
Clacu08g1329 | 291 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 48 | 259 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Clacu08g1329 | 291 | PIRSF | ESCAROLA | 9 | 290 | IPR014476 | GO:0003680(InterPro) | |
Clacu08g1329 | 291 | Gene3D | - | 93 | 225 | - | - | |
Clacu08g1329 | 291 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Clacu08g1329 | 291 | MobiDBLite | consensus disorder prediction | 222 | 258 | - | - | |
Clacu08g1329 | 291 | MobiDBLite | consensus disorder prediction | 244 | 258 | - | - | |
Clacu08g1329 | 291 | CDD | DUF296 | 94 | 207 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g1296 | Clacu-Chr3:24942690 | Clacu08g1329 | Clacu-Chr8:23297496 | 7.70E-36 | dispersed | |
Clacu08g1329 | Clacu-Chr8:23297496 | Clacu09g1220 | Clacu-Chr9:12287147 | 1.70E-44 | dispersed | |
Clacu11g1638 | Clacu-Chr11:27538526 | Clacu08g1329 | Clacu-Chr8:23297496 | 9.90E-82 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g1329 | - | - | - | 0.0 |