Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1329 ATGAAAGGCGATTTTGCTCATCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTTCCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCGCCGCCGTGCCTTCCCCCTTTAAACACCGCCCGGAGCTAACTTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCAAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTCACGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTTAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACACCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTCTTCCCTCAAACCACGCCGTTACCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGCGGTTTGGTCGCCGGTGCTTTAATTGCCGCCGGTACCGTTTTTGTCGTTGCCTCGTCGTTCAATAATCCGCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGCGGTGGAGATAGTAGCGGGCACGGGCAGGGGCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTATAGTTGCCACGCTCCGTCCGACGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGCCGTACTAA 876 56.62 MKGDFAHPKSKTSNMLSKFHLSAHPFSHHPPPQQPADEPTAAVPSPFKHRPELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQTTPLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGQGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPPY 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23297496 23298371 + ClG42_08g0132900.10 Clacu08g1329 255671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1329 291 FunFam AT-hook motif nuclear-localized protein 94 226 - -
Clacu08g1329 291 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Clacu08g1329 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 219 - -
Clacu08g1329 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 208 IPR005175 -
Clacu08g1329 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 259 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu08g1329 291 PIRSF ESCAROLA 9 290 IPR014476 GO:0003680(InterPro)
Clacu08g1329 291 Gene3D - 93 225 - -
Clacu08g1329 291 MobiDBLite consensus disorder prediction 1 86 - -
Clacu08g1329 291 MobiDBLite consensus disorder prediction 222 258 - -
Clacu08g1329 291 MobiDBLite consensus disorder prediction 244 258 - -
Clacu08g1329 291 CDD DUF296 94 207 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1296 Clacu-Chr3:24942690 Clacu08g1329 Clacu-Chr8:23297496 7.70E-36 dispersed
Clacu08g1329 Clacu-Chr8:23297496 Clacu09g1220 Clacu-Chr9:12287147 1.70E-44 dispersed
Clacu11g1638 Clacu-Chr11:27538526 Clacu08g1329 Clacu-Chr8:23297496 9.90E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1329 - - - 0.0