Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1331 ATGTCAGCGGATCTCGGATGCGTGATCGTCGCCGTCGACGGCAGCGAAGAGAGCATGGGTGCTTTACGGTGGGCGTTTCAAAATCTCAAGCTCCGTTCATCGGCACCGGACTCCACCGATGGAACTTTCGTTGTGTTGCATGTGCAACCTCCTCCTTCAATTGCCGCTGGTCTCAGTCCTGCTCCAATCCCCTTTGGCGGTCCTAGCGATCTGGAGGTTCCTGCTTTCACAGCAGCGATTGAGTCCCATCAGAGGCGGATTACAGCTGCGATACTGGACCATGCTTCACGGATTTGCTCCGAGTACAAAGTGAACGTGGAAACTAAAGTAGTAATCGGAGATCCAAAGGAAAAGATCTGTGAAGTGGTTGAGAATTTGCATGCTGATTTGCTAGTTATGGGGTCCCGTGCTTTTGGTCCCATCAAAAGCCACACTGGACAGTTCCAGCATGGTTACATATTGTACATTGTAAGCTGTTGCTTTTTGATGCAGAGGAACACACAAGAAATCTCCCTCTTAGAGAAAACACTTAAGCCCATAATGCCAACATGTTCCAATGCCACACAAGAGCCTCCTCCTGGACAAGATAATGTGAAATCTCCCATGGCCATTGTTAATACCTATGTTAGAATGGGCAAAAGCAGACTGAGGAGGGAGAGGAAAGCAAAGGCCCTTGTGACGGATGTTCTTGGGAAGTGTAAGCAACTATTGCACCAATCATGTAGAATGCCCAGTCATCATAGTCAAGGACAAGAAAAGGGGCAGTTCGTCTTGAGCTTAATAGGTACACACAACACTTCATTCAAGGACTCTCTTATGCGTTCGCCGCCGATTTCTTTTTCTGTTATGCGTGCCTGTTACCGTCTTATCATACTCGCTGACGTTCCTATTCATCAATTGGATTGCTTTTCTGCTTCCCTTTCTGCTATAGTGTGTGCATGGGCATTGCAGTGTCTTATGCGAGCCATATTGTGCAGCCATATTCATTTTCGTCGGCAAGTTTACCAAAACAGTAAACAATCAAACCATTCAATCTTCGGAATGATAAATGAGGTCTTATTGATCAAATTAAGTTCAAAAAATATATCGGTTAATGGAAACAGCTGGATTTATGGTGGGCCTGGCCCAATAAGAAAACAAATTGCCCTTCTGGTACTGAATTCCAATGCTTCCGATCTCTGTGCCTCCGGATCGGACGGCGATCTCTCCATCATACCCATCTATGGCAAATGCTCGCCATTCACGGCGCCAAAGTCAGAATCTTGGGTGAACACGGTGATAGACATGGCTTCAAAGGACCCAGCCAGAATTAAGTACTTGTCCAGCCTTGCTGCCCAGAAGACGGTGGCGGCTCCAATCGCCTCCGGGCAGCAGATTCTTAACATTGGGAATTATGTTGTGAGAGTTCAACTAGGTACTCCGGGTCAAGTAATGTATATGGTTCTTGACACCAGCAACGACGCCGCCTGGGCGCCGTGCTCCGGCTGCACCGGTTGTTCCGCCACCACTTTTTGGTCTAAGAATTCCTCAACTTTTGCGACTTTAGATTGCTCTAAACCACAATGTAGTCAGGCTCGGGGTCTTTCCTGTCCGACCACCGGCAACGCCGATTGCCTATTCAATCAAACATACGGCGGCGACTCATCGTTTTCAGCCACTTTGGTTCAAGACTCTCTCCATTTGGGCGCTGTCGTCATTCCAAATTTCTCATTTGGTTGCATCAGCTCCGCCTCCGGCAGCTCCATTCCGCCGCAAGGCCTGATGGGTCTAGGCCGTGGTCCCCTCTCCCTTATCTCCCAATCCGGTTCACTCTACTCCGGTCTATTCTCCTACTGCCTCCCGAGTTTCAAATCCTACTACTTCTCCGGTTCACTAAAACTTGGACCGGCCGGTCAACCAAAGTTAATCCGATCCACCCCACTCCTTCGCAACCCGCACCGGCCCTCGCTCTACTACGTGAACCTAACCGGCATCAGCGTTGGTCGGGTCCTCGTCCCGATTTCCCCTGAGCATCTCGCATTTGACCCGAACACGGGAGCGGGAACCATCATTGACTCGGGCACGGTAATAACCCGGTTCGTGTACCCGGTTTACACGGCGGTTCGAGATGAGTTTAGAAAGCAAGTGGGAGGTTCGTTTTCGCCGTTGGGGGCTTTTGACACGTGTTTTGCAACGAGCAATGAGGTTTCGGCACCTAGCATTACGTTCCATTTGAGTGGATTGGATTTGAAATTGCCAATGGAAAATAGTTTGATTCACAGCAGCGCGGGTTCGTTGGCTTGTTTGGCGATGGCGGCGGCTCCAAATAATGTGAATTCTGTGTTGAATGTGATAGCCAATTTGCAGCAGCAAAATCATCGGATTTTGTTTGATATTACTAATTCTAAATTGGGGATTGCTCGTGAGCTTTGTAATTAG 2418 48.8 MSADLGCVIVAVDGSEESMGALRWAFQNLKLRSSAPDSTDGTFVVLHVQPPPSIAAGLSPAPIPFGGPSDLEVPAFTAAIESHQRRITAAILDHASRICSEYKVNVETKVVIGDPKEKICEVVENLHADLLVMGSRAFGPIKSHTGQFQHGYILYIVSCCFLMQRNTQEISLLEKTLKPIMPTCSNATQEPPPGQDNVKSPMAIVNTYVRMGKSRLRRERKAKALVTDVLGKCKQLLHQSCRMPSHHSQGQEKGQFVLSLIGTHNTSFKDSLMRSPPISFSVMRACYRLIILADVPIHQLDCFSASLSAIVCAWALQCLMRAILCSHIHFRRQVYQNSKQSNHSIFGMINEVLLIKLSSKNISVNGNSWIYGGPGPIRKQIALLVLNSNASDLCASGSDGDLSIIPIYGKCSPFTAPKSESWVNTVIDMASKDPARIKYLSSLAAQKTVAAPIASGQQILNIGNYVVRVQLGTPGQVMYMVLDTSNDAAWAPCSGCTGCSATTFWSKNSSTFATLDCSKPQCSQARGLSCPTTGNADCLFNQTYGGDSSFSATLVQDSLHLGAVVIPNFSFGCISSASGSSIPPQGLMGLGRGPLSLISQSGSLYSGLFSYCLPSFKSYYFSGSLKLGPAGQPKLIRSTPLLRNPHRPSLYYVNLTGISVGRVLVPISPEHLAFDPNTGAGTIIDSGTVITRFVYPVYTAVRDEFRKQVGGSFSPLGAFDTCFATSNEVSAPSITFHLSGLDLKLPMENSLIHSSAGSLACLAMAAAPNNVNSVLNVIANLQQQNHRILFDITNSKLGIARELCN 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23329006 23339240 + ClG42_08g0133100.10 Clacu08g1331 255673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1331 805 CDD USP_Like 8 142 - -
Clacu08g1331 805 Gene3D HUPs 7 149 IPR014729 -
Clacu08g1331 805 SUPERFAMILY Acid proteases 461 804 IPR021109 -
Clacu08g1331 805 PANTHER ASPARTYL PROTEASES 398 804 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Clacu08g1331 805 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 163 - -
Clacu08g1331 805 Pfam Universal stress protein family 8 137 IPR006016 -
Clacu08g1331 805 Gene3D Acid Proteases 630 805 IPR021109 -
Clacu08g1331 805 FunFam aspartyl protease AED3 443 628 - -
Clacu08g1331 805 Pfam Xylanase inhibitor N-terminal 465 628 IPR032861 -
Clacu08g1331 805 ProSiteProfiles Peptidase family A1 domain profile. 465 800 IPR033121 -
Clacu08g1331 805 Gene3D Acid Proteases 440 628 IPR021109 -
Clacu08g1331 805 Pfam Xylanase inhibitor C-terminal 651 800 IPR032799 -
Clacu08g1331 805 FunFam Aspartyl protease AED3 629 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2889 Clacu-Chr5:36088406 Clacu08g1331 Clacu-Chr8:23329006 4.90E-133 dispersed
Clacu08g1331 Clacu-Chr8:23329006 Clacu05g2238 Clacu-Chr5:30839908 4.60E-20 dispersed
Clacu08g1331 Clacu-Chr8:23329006 Clacu09g0348 Clacu-Chr9:3006312 2.10E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g279 . . . . . . . . . . . . . . . . . Bhi04g01921 . . . Hepe02g2278 . Lcy10g1220 Cla08g01171 Cam08g1635 Cec08g1208 Cco08g1331 Clacu08g1331 . Cre08g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01032 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012953 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27