Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1338 ATGGCCGCCACCGTGCCGGAAAATCTCTCTCGCGAGCAATATGTGTATCTAGCGAAGCTTGCCGAGCAGGCTGAAAGATATGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCAGGCTCTGAGCTCTCTGTCGAGGAGCGAAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGCTCACTTCGAGCCGCTTGGCGGATTGTCTCTTCCATCGAGCAAAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTACAGATCAAAGGTTGAGGCTGAGCTTTCCGACGTCTGTGCGAGTATTTTGCAGCTTTTGGACTCGAATCTTATTCCCTCCGCCTCTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAAGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGGGATGAGAGGAAAGCCGCTGCTGAGGATACTATGCTGGCTTATAGAGCTGCTCAGGATGTCGCAGTTGCAGATCTTGCACCCACTCATCCGATAAGGCTAGGGCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGGCATTTGAGGAAGCCATTGCTGAACTGGACACTTTGGGTGAAGAATCATACAAGGACAGTACCCTCATCATGCAACTATTGAGGGACAACCTCACTCTCTGGACTTCAGATGCTCAGGACCAGTTAGATGAGTCATAG 759 48.35 MAATVPENLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVEAELSDVCASILQLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQDVAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23406850 23410180 + ClG42_08g0133800.10 Clacu08g1338 255680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1338 252 SUPERFAMILY 14-3-3 protein 10 244 IPR036815 -
Clacu08g1338 252 SMART 1433_4 11 251 IPR023410 -
Clacu08g1338 252 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Clacu08g1338 252 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Clacu08g1338 252 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Clacu08g1338 252 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Clacu08g1338 252 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Clacu08g1338 252 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
Clacu08g1338 252 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Clacu08g1338 252 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
Clacu08g1338 252 FunFam 14-3-3 protein epsilon 8 252 - -
Clacu08g1338 252 Coils Coil 17 37 - -
Clacu08g1338 252 Gene3D - 1 252 IPR036815 -
Clacu08g1338 252 PANTHER 14-3-3 PROTEIN 11 247 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Clacu08g1338 252 Pfam 14-3-3 protein 17 242 IPR023410 -
Clacu08g1338 252 PIRSF 14-3-3 6 252 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1338 Clacu-Chr8:23406850 Clacu11g1607 Clacu-Chr11:27240050 1.40E-100 dispersed
Clacu11g1631 Clacu-Chr11:27454631 Clacu08g1338 Clacu-Chr8:23406850 1.60E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1338 K06630 - csv:101222827 481.87