Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1342 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACAAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATAATGGACGGCTTAGTGAAGCTGAATCTAGGAAGTATTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAGAATCTGCTACTTGACTCCCTCGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGACGACCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCCTCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCCAAAGAATATTTGATCCCAATCCTTCAACTCGTATTACAATTGAACAGATCAGAGAGGAAGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAACTGACAGAAGAACAACACGGTCACGACGATATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACAATGTTTGACCGTGGCCGGGATTCTATGAAGTACCCGACACGCTTCATCTGCCAAAAGCCTGCAAAGGTTTTACTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACTCACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCGGCAAGCAAAACTTCGTATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACATTCTTTATGGTGGACATCCAGAAAGCAGCAGGGGAAACCAGCGAATACCTCAAGTTCTACAAGAGCTTTTATAGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCGGCAAATCAAGGATCACCAAGAACAAGAACCGATGCCTCGCCATTCTTTTGCTAAATAGAGAAGTAACAATGGCATTGTCGTGGTATTTGTCCGAAGCCCAATATCAGCTGGTTATTCTCCTGATCTTACTTATAGAAGAAATTAGTTTCATATGA 1455 42.34 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHNGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIQRIFDPNPSTRITIEQIREEEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEQLTEEQHGHDDMSPLALNAFDLIILSQGLNLGTMFDRGRDSMKYPTRFICQKPAKVLLSTMEVVAQSMGYKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSKLEDIIWKPSIDTGKSRITKNKNRCLAILLLNREVTMALSWYLSEAQYQLVILLILLIEEISFI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23428592 23434584 - ClG42_08g0134200.10 Clacu08g1342 255684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1342 484 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Clacu08g1342 484 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu08g1342 484 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Clacu08g1342 484 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1342 484 Gene3D Kinase associated domain 1, KA1 307 428 - -
Clacu08g1342 484 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Clacu08g1342 484 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Clacu08g1342 484 FunFam Non-specific serine/threonine protein kinase 2 303 - -
Clacu08g1342 484 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Clacu08g1342 484 CDD CIPK_C 309 424 - -
Clacu08g1342 484 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Clacu08g1342 484 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Clacu08g1342 484 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1342 484 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1342 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1787 Clacu-Chr5:27004319 Clacu08g1342 Clacu-Chr8:23428592 8.80E-106 dispersed
Clacu08g1342 Clacu-Chr8:23428592 Clacu10g1289 Clacu-Chr10:25826814 1.30E-97 dispersed
Clacu11g0371 Clacu-Chr11:3384217 Clacu08g1342 Clacu-Chr8:23428592 3.70E-13 dispersed
Clacu06g1207 Clacu-Chr6:22734961 Clacu08g1342 Clacu-Chr8:23428592 6.60E-171 transposed
Clacu01g1929 Clacu-Chr1:31392244 Clacu08g1342 Clacu-Chr8:23428592 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73765 PF00069 Pkinase 3.30E-71 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1342 - - - 0.0