Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1345 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTAATGGCTCTACGAAGAGATGCAAATTGGGAAGCCATTCCAACCGAAATCACCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGATCAAAGCACTGTAAATTTTCCCCCAAATTCTTCTTCAGAACCTCTCTCCGCTCAGAATCTCGACGAATTTTACCATCCTTTAGCAAATGAGTTCTCAGTACCACAAATGCCTGATTCCGCTTATACCGCCATGGAAGTAGCAGCAGCAGCCACTGCGCCTCTGCCATTTCAACCAGCGCATCCGAATGTGGAGCGAGAAGAAGAGGAAGAGGAACTAGGTTTTCTCGCGGATGAGATTCAGAATATGGAAACAGTTCAAGTTGAATCGGCTTGTAAAATGGAGCCGAACCAATCTCCAGAAGAACTCCAGGTTTTCAACATCGGAACATGCTCCTCCCTGGAACGAAAGAACAGAGCGAAGAAATTGCAAGGCCAACCATCAAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATTGTCCCGAAGATCAGTAAGATGGACAGAACAGCGATTCTGGCAGATGCGATTGAGTATATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGCGAAGTAGAAGGATCAAATCCGAGGACGAATTCATTGAAGAACACAAAACCGAGTGAATTCGTAGTGAGGAATTCACCAAAATTTGAAGTAGAAAACAGAAATGGAGACACGAGAATCGAGATTTGCTGTGCGGGAAAGCCAGGATTGGTATTATCAACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCTACTTGTTCTTCTCAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1014 45.07 MELDEHVFLEELMALRRDANWEAIPTEITDLCSNAWAFDYCFDQSTVNFPPNSSSEPLSAQNLDEFYHPLANEFSVPQMPDSAYTAMEVAAAATAPLPFQPAHPNVEREEEEEELGFLADEIQNMETVQVESACKMEPNQSPEELQVFNIGTCSSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQSEVEGSNPRTNSLKNTKPSEFVVRNSPKFEVENRNGDTRIEICCAGKPGLVLSTVNTIEALGLEIQQCVISCFNDFALQATCSSQELKQRTELKPEELKEALFRNAGYGGSCL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23465148 23467424 + ClG42_08g0134500.10 Clacu08g1345 255687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1345 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 332 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu08g1345 337 Pfam Helix-loop-helix DNA-binding domain 174 216 IPR011598 GO:0046983(InterPro)
Clacu08g1345 337 Coils Coil 108 128 - -
Clacu08g1345 337 SMART finulus 173 222 IPR011598 GO:0046983(InterPro)
Clacu08g1345 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983(InterPro)
Clacu08g1345 337 Gene3D - 156 231 IPR036638 GO:0046983(InterPro)
Clacu08g1345 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983(InterPro)
Clacu08g1345 337 Coils Coil 206 226 - -
Clacu08g1345 337 CDD ACT_UUR-ACR-like 262 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1345 Clacu-Chr8:23465148 Clacu11g1359 Clacu-Chr11:23576940 2.50E-12 dispersed
Clacu05g1414 Clacu-Chr5:16452216 Clacu08g1345 Clacu-Chr8:23465148 4.20E-33 transposed
Clacu01g1886 Clacu-Chr1:30999372 Clacu08g1345 Clacu-Chr8:23465148 3.40E-65 wgd
Clacu11g1668 Clacu-Chr11:27894256 Clacu08g1345 Clacu-Chr8:23465148 5.80E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48190 PF00010 HLH 6.20E-10 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1345 - - - 0.0