Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1353 ATGGCTTTCCACTCAGCTTTCTTTCTTCTTTTGTTCTTCACTACTTTCTCCTTCTCTTCTTCTCAAGCTCTTACTACTTCTGCTACTAACAACCAATCTCAGTTCTTTTATCTCATGCAAAAGACTGCCTCAGGAGACTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCGTTCTGCAGCTTCACTGGAATCCGGTGCAATGACCGAGGTCACGTTGTCGAGATTGATATCACTGGCCAGTCACTCTCTGGTAGCTTTCCGGAAGATGTATGTTCTTACTTGCCAGAGCTGAGAGTTCTTCGTCTCGCTGGTACCAGTTTCTACGGACGTTTTCCTTCAGGAATCACCAACTGCTCTCTCATTGAAGAACTTAACATGAGCTCTTTGTATCTCAATGGAAGTATCCCAGATTTATCGCAAATGAAACAACTGCGTGTACTCGACCTCTCGTACAATTTCTTTACTGGTGATTTTCCCATGTCGGTTTTCGACCTTGTTAATCTTGAGGTGCTGAATTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGCCTGACGAAGCTGAAATCTATGGTGTTGACAACCTGTATGTTAGATGGTGAAATCCCCCGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAGAGAAATCTCCTTGCTGAAGAACTTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAGGTTGGAAATTTAACAGAGCTTGTGGACATGGACATGTCAGTGAACCTTTTGACAGGAGAGCTTCCAGAATCCATTTGTAAACTTCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACAGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACTATGCTATCACTTTATGACAATTTTCTTACTGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGACATATGCAGAGGAGGGAAATTGCTATACTTTCTTGTCCTGCAAAATAGGCTTTCTGGAGAAATACCAGCAAGTTTTGCTGAATGCATATCACTTTTAAGGTTTAGGATTAGTTTCAATCAGTTGATAGGAACAATTCCTGAAGGGGTTTTGGGTCTCCCCCATGTTTCAATTATTGATGTTGCTCATAATAATCTCACTGGTTCCATTTCAAATTCTATCTCACAGGCAAGAAACTTGTCAGAGTTGTTCTTACAAGGAAACAGGATTTCTGGAGTTATACCACCAGAGATTTCAGGAGCAGCCAATCTGGTGAAGCTTGATCTCAGCAACAATCTTCTCTCGGGTCCAGTGCCATCGCAGATTGGCAATCTGATGAAACTAAATCAGGTGATGTTACAAGGAAACCAATTGGATTCTTCAATCCCCACTTCATTCACATCTTTAAAATCTCTCAACGTTCTTGATCTCTCGAACAACCGTTTATCCGGGAAAATCCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCGAACAATCAACTATCGGGTCCAATTCCTTTGTCTTTGATCAAACAAGGATTAGCAGATAGCTTCTCCGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCTGATCAGAAATTCCCCATTTGTTCACATTTCTCCTTTAAAAAACGTCTAAATTTCATCTGGGGAATCGTTATTCCATTGCTCATCTTCTTCACCGGCGCCGTCCTGTTTCTAAAACGACGAATCACAACAAGAAAAACATCAGAGATCGAAAACGAACAAACCCTCTCCTCTTCATTCTTCCATTTGCAGAGCTTCGATCAAAGCAGGATTCTCGAAGCCATGGTGGAAAAGAACATTGTGGGACACGGTGGATCAGGAACAGTCTACAAAATTGAGCTCGGAAATGGAGAAATCGTCGCCGTGAAGAGGCTATGGAATCGAAGAGCGAAACATCTCTTCGACAAAGAATTGAAAACAGAGGTCGAAACCCTAGGAACAATAAGACACAAGAACATCGTGAAACTCTATAGCTACTTTTCAGGTCTAAATTGCAGCCTTCTGGTTTACGAATACATGCCAAACGGCAATCTATGGGACGCCCTTCATAAAGGGTGGATTCATCTTGATTGGCCCACGCGCCACCGCATCGCGGTGGGAATCGCACAAGGTCTCGCTTATCTCCACCACGATCTCTCGCCGCCGGTAATCCACAGAGATATCAAAACCACAAACATTCTATTAGATGCAAATTACCAACCCAAAGTTGCAGATTTCGGCATCGCCAAAGTTCTACAAGGAACTAAAGATTCAACCAACTCTGTAATCGCAGGGACATACGGCTATCTAGCCCCTGAATATGCATATTCATCAAAGGCAACAACCAAGTGCGATGTGTATAGCTTTGGAGTAGTGTTGATGGAGTTGATAACAGGGAAGAAGCCGATTGAAACAGAGTACGGTGAAAACAAGAACATAGTGTTCTGGGTTTCGAACAAAGTGGACACAAAAGAAGGGGTTCTTGAGATTCTTGACAAGAAACTAAAAGGGTTGTTCAGGGATGATATAATTAAGGCTCTGAGAATCGCCATTCGCTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGACCGTCCCTTTGAAAAAGGAGAAGATACGTATATGATGTCACTAAAATAA 2823 42.72 MAFHSAFFLLLFFTTFSFSSSQALTTSATNNQSQFFYLMQKTASGDFLSDWDLSGGKSFCSFTGIRCNDRGHVVEIDITGQSLSGSFPEDVCSYLPELRVLRLAGTSFYGRFPSGITNCSLIEELNMSSLYLNGSIPDLSQMKQLRVLDLSYNFFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISSLTKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPREISLLKNLQQLELYYNELTGNIPEEVGNLTELVDMDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENRLSGPLPLDICRGGKLLYFLVLQNRLSGEIPASFAECISLLRFRISFNQLIGTIPEGVLGLPHVSIIDVAHNNLTGSISNSISQARNLSELFLQGNRISGVIPPEISGAANLVKLDLSNNLLSGPVPSQIGNLMKLNQVMLQGNQLDSSIPTSFTSLKSLNVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGPIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHFSFKKRLNFIWGIVIPLLIFFTGAVLFLKRRITTRKTSEIENEQTLSSSFFHLQSFDQSRILEAMVEKNIVGHGGSGTVYKIELGNGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLNCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIETEYGENKNIVFWVSNKVDTKEGVLEILDKKLKGLFRDDIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEKGEDTYMMSLK 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23572736 23575650 + ClG42_08g0135300.10 Clacu08g1353 255695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1353 940 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515(InterPro)
Clacu08g1353 940 Pfam Leucine Rich Repeat 434 455 IPR001611 GO:0005515(InterPro)
Clacu08g1353 940 Pfam Leucine Rich Repeat 144 163 IPR001611 GO:0005515(InterPro)
Clacu08g1353 940 Pfam Leucine Rich Repeat 506 528 IPR001611 GO:0005515(InterPro)
Clacu08g1353 940 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515(InterPro)
Clacu08g1353 940 Pfam Leucine Rich Repeat 458 480 IPR001611 GO:0005515(InterPro)
Clacu08g1353 940 Gene3D Phosphorylase Kinase; domain 1 631 724 - -
Clacu08g1353 940 FunFam Receptor protein-tyrosine kinase CEPR1 288 574 - -
Clacu08g1353 940 Gene3D Ribonuclease Inhibitor 34 180 IPR032675 -
Clacu08g1353 940 SUPERFAMILY L domain-like 257 573 - -
Clacu08g1353 940 PRINTS Leucine-rich repeat signature 459 472 - -
Clacu08g1353 940 PRINTS Leucine-rich repeat signature 504 517 - -
Clacu08g1353 940 Gene3D Ribonuclease Inhibitor 181 284 IPR032675 -
Clacu08g1353 940 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 322 918 IPR051716 -
Clacu08g1353 940 ProSiteProfiles Protein kinase domain profile. 647 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1353 940 FunFam receptor protein-tyrosine kinase CEPR1 630 724 - -
Clacu08g1353 940 Pfam Protein kinase domain 649 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1353 940 SMART serkin_6 647 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1353 940 FunFam Leucine-rich repeat receptor-like protein kinase 182 284 - -
Clacu08g1353 940 FunFam leucine-rich repeat receptor-like protein kinase TDR 725 926 - -
Clacu08g1353 940 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524(InterPro)
Clacu08g1353 940 SUPERFAMILY Protein kinase-like (PK-like) 625 916 IPR011009 -
Clacu08g1353 940 SMART LRR_typ_2 288 312 IPR003591 -
Clacu08g1353 940 SMART LRR_typ_2 433 456 IPR003591 -
Clacu08g1353 940 SMART LRR_typ_2 240 264 IPR003591 -
Clacu08g1353 940 SMART LRR_typ_2 504 528 IPR003591 -
Clacu08g1353 940 SMART LRR_typ_2 166 192 IPR003591 -
Clacu08g1353 940 ProSiteProfiles Leucine-rich repeat profile. 506 528 IPR001611 GO:0005515(InterPro)
Clacu08g1353 940 Gene3D Transferase(Phosphotransferase) domain 1 725 928 - -
Clacu08g1353 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1353 940 SUPERFAMILY RNI-like 72 352 - -
Clacu08g1353 940 Gene3D Ribonuclease Inhibitor 294 574 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1020 Clacu-Chr8:20200202 Clacu08g1353 Clacu-Chr8:23572736 1.60E-78 dispersed
Clacu08g1353 Clacu-Chr8:23572736 Clacu11g1675 Clacu-Chr11:27998616 4.00E-180 dispersed
Clacu01g1868 Clacu-Chr1:30804642 Clacu08g1353 Clacu-Chr8:23572736 5.30E-55 wgd
Clacu11g1691 Clacu-Chr11:28156176 Clacu08g1353 Clacu-Chr8:23572736 1.20E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73766 PF00069 Pkinase 7.60E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1353 - - - 0.0