Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1369 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACAGCCACTGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCCTCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1068 53.56 MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23727519 23729335 - ClG42_08g0136900.10 Clacu08g1369 255711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1369 355 MobiDBLite consensus disorder prediction 185 209 - -
Clacu08g1369 355 Gene3D - 238 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu08g1369 355 PIRSF Txn_fac_GATA_plant 22 334 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Clacu08g1369 355 PANTHER GATA TRANSCRIPTION FACTOR 40 311 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Clacu08g1369 355 SMART GATA_3 239 289 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1369 355 MobiDBLite consensus disorder prediction 178 243 - -
Clacu08g1369 355 Pfam GATA zinc finger 245 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1369 355 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1369 355 FunFam GATA transcription factor 237 322 - -
Clacu08g1369 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Clacu08g1369 355 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1369 355 CDD ZnF_GATA 244 291 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1369 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1369 Clacu-Chr8:23727519 Clacu09g0009 Clacu-Chr9:206663 7.70E-68 dispersed
Clacu10g1328 Clacu-Chr10:26279607 Clacu08g1369 Clacu-Chr8:23727519 4.30E-29 transposed
Clacu11g1695 Clacu-Chr11:28196585 Clacu08g1369 Clacu-Chr8:23727519 1.40E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1369 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.5e-69 257.7
Clacu11g1695 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 7.9e-67 251.1
Clacu01g2068 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.3e-42 167.5
Clacu10g0225 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.7 4.1e-139 491.9
Clacu09g1326 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.1e-134 477.2
Clacu10g0225 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48192 PF00320 GATA 1.80E-15 CL0167 Clacu TF