Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1374 ATGCCTGAGCTCCGTCGCAAACCACGCAGGAGCCGGGTATCCGAAGACCCAGAACCGATTGCGCACCAAACACCCGTTAAGTTAACTGTAACAACACGCCACCGAGGGCAACCTGCTAAACGCAGTGTTGGGAAGAGTATTAAGGAGGGGAAACACGCGATCGATGCCGATGGCGACAGGGATGTTGTGAACCCTGGAATCGGTCTTGAAACGAGGCTACTGCGTGAGAACAAAGACGAAGTAGTTGGGAAGGATAAAGACCTACTGCAGCTTGGTGTTAGAGCTATGGATGAGTTCGATAGCGGTGGACGGAACGGCGATAAGGGTCCTGTAGCCGAAGATGAAGGCACGACTACTCCTCTTCCGGAGAAGGTCCAGGTTGGTGGTTCTCCATTATATAAAGTTGAAAAAAAACTGGGTAAAGGAGGTTTTGGTCAGGTGTATGTGGGTCGACGAGTGGGTCCCACAAGTTTGAATGAAAGATCTGGCCCTGGAGCTGTGGAGGTAGCCTTGAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCTTACGAGTGGCAGGTTTACAATGCACTAGGTGGCAGCCATGGTGTGCCACGAGTTCATTACAAGGGTCGGCAAGGTGACTATTATGTCATGGTTATGGACATGCTTGGACCTAGTCTCTGGGATGTCTGGAATAACAATGCTCACACGATGTCAATTGAAATGGTAGCATGTATCGCCATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAGAGGGTATGTGCATGGTGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCAGGAACCCCAGAAGAGAAAAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACCAAGTGGCGAGATAGTTCGACTGGTCAACATGTTGAGTATGATCAACGACCAGACGTTTTCCGGGGAACAGTTCGGTATGCTAGTGTGCATGCACATCTTGGCAGAACTGCTAGTCGGAGAGATGACTTAGAATCACTCGCTTACACGCTTGTTTTTCTTCTTCGTGGTCGGCTGCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAGAAGATGGCTACTTCCTCTGAAACGCTGTGCTGTTTTTGCCCTCAGCCTTTTAGACAGTTTGTTGAGTATGTTGTAAATTTGAAATTTGATGAAGAGCCAAACTATGCAAGATATATCTCCCTCTTTGATGGGATTGTCGGTCCAAATCCAGATATCCGTCCAATAAACACAGATGGTGCACAAAAACTTATATTTCAGGTTGGGCATAAGAGAGGAAGGCTATCCATGGAGGATGAAGATGATGAACAACCAAAGAAGAAAGTTCGAATGGGGATGCCTGCAACTCAATGGATTAGTGTTTATAATGCCCGTAGACCAATGAAACAAAGATACCACTATAATGTTGCTGATATGAGGCTCTCTCAGCATATTGAGAAGGGGAATGAAGATGGTTTATTTATTAGTTGTGTTGCTTCATGTTCAAACCTTTGGGCCCTTATTATGGATGCTGGAACTGGATTTACTGCTCAAGTTTATGAACTCTCACCATTCTTTCTTCACAAGGAATGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGAGCTAATAACGGGAGCTCATTGGTAGTAATGTCCAAAGGGACTCAGTACCTCCAGCAATCCTATAAAGTCAGCGATTCATTTCCCTTCAAGTGGATAAATAAGAAATGGAGGGAGGGATTTTATGTTACTGCCATGGCCACTGCCGGCAGTAGATGGGCAATTGTCATGTCACGTGGTGCAGGATTTTCTGACCAGGTTGTGGAACTGGATTTCCTGTATCCCAGTGAAGGCATTCATCGCAGGTGGGATGGTGGTTACCGCATCACATCAACTGCAGCAACTTTGGACCAGGCTGCTTTTGTTCTGAGTGTGCCAAGGAGAAAGCCTGCTGATGAAACTCAAGAAACACTCCGAACATCTGCCTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAGAATCTTTATATTGCATCTATTTGCTACGGCCGAACTCTAACCTGTTCATTAACGTCGCCACCGTATTGCATCAGTTACAGACTCCTATGCTCTGGCTTTCGTTCATGTTATTCAATTATGGTTATCAAGCATCAGTGGGCTCTGGATATTCATTTCCGTTTTGCTTCAAATTATGTCAGATTCAGCCATCGGCTAGTTGGCCACTTAGATCTTGCCAATTTGTTCTTCGAGAAATTCTACCTTGCTGTTGCATTCTTCTTAGAGCAAGCACATCGTGTTGTGTGGTATCTGAATTTTAAAGTAGCACCTTCATAA 2373 45.13 MPELRRKPRRSRVSEDPEPIAHQTPVKLTVTTRHRGQPAKRSVGKSIKEGKHAIDADGDRDVVNPGIGLETRLLRENKDEVVGKDKDLLQLGVRAMDEFDSGGRNGDKGPVAEDEGTTTPLPEKVQVGGSPLYKVEKKLGKGGFGQVYVGRRVGPTSLNERSGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMATSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIRPINTDGAQKLIFQVGHKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFTAQVYELSPFFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDGGYRITSTAATLDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTLTCSLTSPPYCISYRLLCSGFRSCYSIMVIKHQWALDIHFRFASNYVRFSHRLVGHLDLANLFFEKFYLAVAFFLEQAHRVVWYLNFKVAPS 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23764734 23771310 + ClG42_08g0137400.10 Clacu08g1374 255716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1374 790 PANTHER CASEIN KINASE-RELATED 132 547 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Clacu08g1374 790 FunFam casein kinase 1-like protein HD16 106 456 - -
Clacu08g1374 790 SMART serkin_6 133 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1374 790 MobiDBLite consensus disorder prediction 1 59 - -
Clacu08g1374 790 MobiDBLite consensus disorder prediction 42 59 - -
Clacu08g1374 790 CDD STKc_CK1 133 409 - -
Clacu08g1374 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1374 790 MobiDBLite consensus disorder prediction 98 126 - -
Clacu08g1374 790 SUPERFAMILY Protein kinase-like (PK-like) 133 415 IPR011009 -
Clacu08g1374 790 Gene3D Transferase(Phosphotransferase) domain 1 112 456 - -
Clacu08g1374 790 MobiDBLite consensus disorder prediction 1 17 - -
Clacu08g1374 790 ProSitePatterns Protein kinases ATP-binding region signature. 139 172 IPR017441 GO:0005524(InterPro)
Clacu08g1374 790 Pfam Protein kinase domain 133 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1374 790 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1374 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2429 Clacu-Chr2:37262972 Clacu08g1374 Clacu-Chr8:23764734 3.50E-266 dispersed
Clacu08g1374 Clacu-Chr8:23764734 Clacu09g0017 Clacu-Chr9:256822 5.70E-297 dispersed
Clacu08g1374 Clacu-Chr8:23764734 Clacu05g0474 Clacu-Chr5:3938845 5.30E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73768 PF00069 Pkinase 8.20E-16 CL0016 Clacu PK