Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1375 ATGGAGTCTGTTGCCTCTACGTCATCCCCTCATCACGTTCCTCAGTTCAAGCCCTCCCAAGCAGTGGCCGATAGGATTGTTAGAGCTCTCCACCATGACCTCCGTCTTCTTCACCGCTCCGGTTCTAATTTCTTTGTGTTGGGAGCCACAGGCAATGTTTACATCGTGTCTCTATCCTCCACCCCCTCATGCACTTGCCCCGATCGTATTACCCCATGTAAACACATACTGTTTATCTACCTTCAGGCCCTGGGTTTGTCGCTTGATGACATATGTCTTCGGCGAAGAACACTTCGACCTTGCCAATTGAATCGTTTGCTTGCTGCACCCATAATGTTAAAATCACTTGCAGAAGTTGGCTTACGTAGAGTGTTTCATCAACAATTTTTTCAGGTAAAAGAAAGAGCTTCTTCTTCCGTGACTGTTGTAGATATGGAAGATGGGTCTACATGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTTGTTGCTTGTTCGACATGTCGGAATCTTGTTCATGAAGATTGTTTCTCGAGTTTTCTGGTAAGAAAGGCGATGGAGGACTCCGGGACTCGACCTTCTGCCGGTAAATCGACTGGTAATGTCGTCGCTATTGCTGCCGGTGAAGCTCACACTCTCCTTCTCACAGGAGATGGCAGGATGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGGCGGAAGCAGACGAGCTTTTCCCTGTTCGAGTTAAGCTTGGTTCGGAGGAAGAGAATCTCAAAGTTGTGGCAATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATGATGGTTCAGTTTGGTGCTGGGGTTACAATATCTATGGCCAACTTGGATTTGATGGAGGGAATTCCGCCACCCCTTGCTTGCTGAAACAGTTCCTTGAGTTGGAATCTCCAGAATCTTTGACAGAAGAGTCAGGCTCAAAGAGTAAGGGGTCACTAAAGATTTGTGACATCAAAGCCGGGGGGTTGATTTCTTTTGCAATTGACGATCTTGGAGCCCTATGGATGTGGGGTAATTGTCCAAAACCAAATGGTGAGAATGAAGTTGGCTTATCTTATGTTAGCAGCTTCACACCCTCTCCAGTGTGGGATTTCCATGGCCATACTGTAGTTAAGGTTGCTTGTGGAAATGAGCATATTGTGGCGCTGGTTACTGTTGGGGAAACCTACAATAATGGTGAAGACTTAGTTTGCTACTCCTGGGGCGATAATTCTCATGGTCAATTAGGCTTGGGAGATAGAGATGGCAGACCACACCCCCAAATTATCGAGACATTTAATGAGGCATCTCCTTGGGCAGTGTACGAAGTAGCATGCGGGGCATTCCATACTGCTTTACTTAGCCGCAGAAAGAGACCATGTGACGGCTTAGAAAGTGTGTGTTGGACATTTGGTCTCGGGGAAAATGGACAGCTTGGGCATGGAACCACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAGTTGCCACAATCTGTATCTCTGATCTCAGTTGATTGTGGCCTATTTCATACGAGTGTTGTTTCATCAGGTGGAGATCTGTGGTCTTGGGGAATGGAAAGGGGACTTGGCCTTTGTCCAGATGCTAGTTTCACTGGAACTGACACCGGCGATGCTATATCTCCCCTATCCTTCTTCTGCAATGGGTCTGAATCACCAAAATTTTTGGATCCCGTTCAAGTTGCTTGTGGGGCTGCTCATACTGTTATAGTTGCACATAATGGATATAAATTGTGGTCATGGGGACGAGGAAGAAGCGGAGTTCTTGGAAATGGTAAGACAGTCGATTGTTTTACTCCCACGATCGTCTTATGGCCTCCACTTGACGAGGATTTCAATCAAGAGGGAACCGAAACCAAAAGCGAGGAAGATAAAGTTGAACAAAATAAACCCGAGGAAGTAACCGAAGAAAACAAAAAGCTGTTAATAGCTATGGAGGAAATAAAACTTCTTCAAGAGAAATTATCTATCATGGAACGGTATGCAAGCTTTCTTCATGGCTCAATATTTGGAAAACCTTTCCAAGAGGGAGATATCCCACTCTCATTGGGAAATTCTGGTACTCTCGACATTGCTAAGGAATGGGAAAGCATGTTAGAGTCCACAGATCGCTCAAATCTTTTAAGGTTGGAGGTGGTCTATCAAAACATGCTGGCAAGTATTAAAGACAAGATAATGAAGAAAAGGGTCCAGGAGCTTGTGAAGGAGTTTCTTCAATCATCAATGTCTCCAAATTAG 2277 45.41 MESVASTSSPHHVPQFKPSQAVADRIVRALHHDLRLLHRSGSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDICLRRRTLRPCQLNRLLAAPIMLKSLAEVGLRRVFHQQFFQVKERASSSVTVVDMEDGSTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSSFLVRKAMEDSGTRPSAGKSTGNVVAIAAGEAHTLLLTGDGRMYSWGRGMFGRLGTGAEADELFPVRVKLGSEEENLKVVAIAAGSYHSLALADDGSVWCWGYNIYGQLGFDGGNSATPCLLKQFLELESPESLTEESGSKSKGSLKICDIKAGGLISFAIDDLGALWMWGNCPKPNGENEVGLSYVSSFTPSPVWDFHGHTVVKVACGNEHIVALVTVGETYNNGEDLVCYSWGDNSHGQLGLGDRDGRPHPQIIETFNEASPWAVYEVACGAFHTALLSRRKRPCDGLESVCWTFGLGENGQLGHGTTQNELLPKPVKELPQSVSLISVDCGLFHTSVVSSGGDLWSWGMERGLGLCPDASFTGTDTGDAISPLSFFCNGSESPKFLDPVQVACGAAHTVIVAHNGYKLWSWGRGRSGVLGNGKTVDCFTPTIVLWPPLDEDFNQEGTETKSEEDKVEQNKPEEVTEENKKLLIAMEEIKLLQEKLSIMERYASFLHGSIFGKPFQEGDIPLSLGNSGTLDIAKEWESMLESTDRSNLLRLEVVYQNMLASIKDKIMKKRVQELVKEFLQSSMSPN 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23772242 23777146 + ClG42_08g0137500.10 Clacu08g1375 255717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1375 758 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 262 272 IPR000408 -
Clacu08g1375 758 Pfam Regulator of chromosome condensation (RCC1) repeat 591 616 IPR000408 -
Clacu08g1375 758 Pfam Regulator of chromosome condensation (RCC1) repeat 411 460 IPR000408 -
Clacu08g1375 758 Pfam Regulator of chromosome condensation (RCC1) repeat 275 341 IPR000408 -
Clacu08g1375 758 Pfam Regulator of chromosome condensation (RCC1) repeat 220 272 IPR000408 -
Clacu08g1375 758 Pfam Regulator of chromosome condensation (RCC1) repeat 474 520 IPR000408 -
Clacu08g1375 758 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 386 396 IPR000408 -
Clacu08g1375 758 SUPERFAMILY RING/U-box 133 187 - -
Clacu08g1375 758 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 409 463 IPR000408 -
Clacu08g1375 758 SUPERFAMILY RCC1/BLIP-II 195 502 IPR009091 -
Clacu08g1375 758 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 345 399 IPR000408 -
Clacu08g1375 758 ProSiteProfiles Zinc finger SWIM-type profile. 54 84 IPR007527 GO:0008270(InterPro)
Clacu08g1375 758 Coils Coil 647 667 - -
Clacu08g1375 758 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 193 434 IPR051709 GO:0005737(PANTHER)
Clacu08g1375 758 SUPERFAMILY RCC1/BLIP-II 446 616 IPR009091 -
Clacu08g1375 758 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 472 524 IPR000408 -
Clacu08g1375 758 MobiDBLite consensus disorder prediction 626 646 - -
Clacu08g1375 758 PRINTS Chromosome condensation regulator RCC1 signature 386 402 IPR000408 -
Clacu08g1375 758 PRINTS Chromosome condensation regulator RCC1 signature 259 272 IPR000408 -
Clacu08g1375 758 PRINTS Chromosome condensation regulator RCC1 signature 278 294 IPR000408 -
Clacu08g1375 758 PRINTS Chromosome condensation regulator RCC1 signature 222 238 IPR000408 -
Clacu08g1375 758 PRINTS Chromosome condensation regulator RCC1 signature 345 361 IPR000408 -
Clacu08g1375 758 PRINTS Chromosome condensation regulator RCC1 signature 584 605 IPR000408 -
Clacu08g1375 758 PRINTS Chromosome condensation regulator RCC1 signature 514 532 IPR000408 -
Clacu08g1375 758 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 276 344 IPR000408 -
Clacu08g1375 758 MobiDBLite consensus disorder prediction 622 646 - -
Clacu08g1375 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 189 IPR013083 -
Clacu08g1375 758 Gene3D - 408 664 IPR009091 -
Clacu08g1375 758 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 450 460 IPR000408 -
Clacu08g1375 758 Gene3D - 190 407 IPR009091 -
Clacu08g1375 758 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 221 275 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1375 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1375 Clacu-Chr8:23772242 Clacu11g0938 Clacu-Chr11:9102120 5.50E-23 dispersed
Clacu08g1375 Clacu-Chr8:23772242 Clacu03g1309 Clacu-Chr3:25191870 5.30E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33