Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1383 ATGGCCAGAATTGCAATGGGAAGCATCGGCGAGGCCTCCCAGCCCGACTGCATCCGAGCCCTCATTGTCGAGTTCATTGTCACTTTCCTCTTCGTCTTCGCTGGCGTCGGATCAGCCATGGCTGCCAATGCGTTATTGGCAAACACACTAGTGGGTTTATTTGCCGTTGCCGTCGCACATGCGCTTGTAGTGGCTGTGATGATTTCCACAGGTCATATTTCCGGTGGCCACCTCAACCCCGCCGTCACTCTTGGTCTCCTTTTGGGTGGCCACATCACAGTTGTTCGATCCGCTCTATATTGGATCGTTCAGTTACTAGCAGCTTCAGCTGCTAGCTTTTTGTTAACGTACCTCACCGGAGGCTTGGTCACTCCAATTCATACATTAGCAAGCGGAGTTGGTTATATTCAGGGAGTGATATGGGAGATTATTCTAACCTTTTCCTTGCTATTCACTGTGTATGGAACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTGGGAGCCAACATCTTGGCTGGTGGGGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCAGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTTCTCATTCAAAGATCTCATGTGCCTCTACCTAGGGAGGAAGATGGCTATTAG 744 50.0 MARIAMGSIGEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANTLVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLLGGHITVVRSALYWIVQLLAASAASFLLTYLTGGLVTPIHTLASGVGYIQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23876761 23877881 - ClG42_08g0138300.10 Clacu08g1383 255725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1383 247 SUPERFAMILY Aquaporin-like 14 241 IPR023271 -
Clacu08g1383 247 FunFam Probable aquaporin TIP1-1 2 244 - -
Clacu08g1383 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Clacu08g1383 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g1383 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g1383 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g1383 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g1383 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g1383 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g1383 247 PANTHER AQUAPORIN-8 1 237 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Clacu08g1383 247 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Clacu08g1383 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1383 Clacu-Chr8:23876761 Clacu09g0184 Clacu-Chr9:1767788 2.20E-66 dispersed
Clacu08g1383 Clacu-Chr8:23876761 Clacu04g0996 Clacu-Chr4:24122564 1.20E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1383 K09873 - csv:101205380 447.973