Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1401 ATGAAGCGTAGCGCCTCCGAGTTGGCTCTTGAAGAGTTCCTCAAAAAAGCCGCCATCATCTCTCCCGACGACGACGTTATCGACCCCGACGACGAGGACGTTTTCAAAATCGAACAACAACAAATCATCAGAAGCCCAAAAAGAGGCAGAAACTTTCAGGATTCCGCCGATGCCACCTGCTTCTTCGGCGATATTGATTTCAGCTGTTTCCTCGTCAAAAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGCTCCTTTATGGTCACAGAATCTCACTCCTAAGCATTCAAGCTTTTCAGCCACTATAGATTCCCAGTCTTCTATTGTGAGCAGCCCAACATCAGCCAGTAATTTGATGGGCAGAGAGCACCAAAGAGGTAACAATAGTGGGTCCTCTGAAGATCAATCTGATGATGAAATTGAAGCTGGCTCTTGTGAACAAAGCACTGACCCTCTTGCTTTGAAGAGAATCAGAAGAATGATCTCTAACAGGGACTCTGCTAGAAGGTCAAGAAGAAGAAAACAAGCTCATTTGGCTGAACTCGAGAACCAGGTGAAACAATTGAAAGGAGAAAATGAAACCTTGTTCAACCAACTTTTAGATGCTAGTCAACAATATCGTGATGCCAATACGAACAACCGTGTGCTTAAATCAGACGTAGACGCATTGAGAGCTAAGGTGAAGTTGGCGGAAGATACACTTGCTAGAGGCTCAATGACCTGTAGCTTGAATCAGCTGCTGCAGAGTCATTTGAGCACACCACAGCCACTCACGGCACTCAGACGAATGTCAAATGTCGCACCGCCGCTCGGTTTACCTGGAGACGAAGTTTCTTATTCCTGCGTGACAATGTCGGGGCAGAACCCGACCGTGGGGCTCCCGAACTCAGATATGCATATGAAAACAGGAATGGGTAGTGAGGCTGTTAGCTGTGTTTCAGGGATTTGGCCTAGAAATTAG 984 46.85 MKRSASELALEEFLKKAAIISPDDDVIDPDDEDVFKIEQQQIIRSPKRGRNFQDSADATCFFGDIDFSCFLVKNNREIMDAIVNCGGGLAEAPLWSQNLTPKHSSFSATIDSQSSIVSSPTSASNLMGREHQRGNNSGSSEDQSDDEIEAGSCEQSTDPLALKRIRRMISNRDSARRSRRRKQAHLAELENQVKQLKGENETLFNQLLDASQQYRDANTNNRVLKSDVDALRAKVKLAEDTLARGSMTCSLNQLLQSHLSTPQPLTALRRMSNVAPPLGLPGDEVSYSCVTMSGQNPTVGLPNSDMHMKTGMGSEAVSCVSGIWPRN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24091916 24095502 - ClG42_08g0140100.10 Clacu08g1401 255743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1401 327 MobiDBLite consensus disorder prediction 106 141 - -
Clacu08g1401 327 Pfam bZIP transcription factor 161 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1401 327 Coils Coil 172 241 - -
Clacu08g1401 327 SUPERFAMILY Leucine zipper domain 163 212 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1401 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1401 327 SMART brlzneu 159 223 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1401 327 MobiDBLite consensus disorder prediction 106 155 - -
Clacu08g1401 327 FunFam BZIP transcription factor 161 212 - -
Clacu08g1401 327 CDD bZIP_plant_GBF1 181 215 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1401 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1401 327 Gene3D - 162 218 - -
Clacu08g1401 327 PANTHER BZIP TRANSCRIPTION FACTOR RISBZ3-RELATED 1 325 IPR044168 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1401 Clacu-Chr8:24091916 Clacu09g0740 Clacu-Chr9:6528786 7.90E-19 dispersed
Clacu08g1401 Clacu-Chr8:24091916 Clacu01g1846 Clacu-Chr1:30575270 5.30E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48196 PF00170 bZIP_1 1.90E-14 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1401 K25784 - csv:101210908 530.791