Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1405 ATGAGTTCGACGGCGCCGTCGCCGACGCCGGTGAGGGTTGCCGCTTCTCCTCCCCTCGAGTCACTCCGTTTAACCCGCGTTTTCGTCTATGGAAGCCTCTTAGCCGATGAAGTCGTAAAGGTTCTTTTCGGCCGCGTTCCACAATCGTTCCCTGCTGTTCTCGATGGCTACCAGAGATTTAGCATTAGAGGACGAGTGTATCCAGCTATTTTGCCCGTGGAGAATAAGAGAGTTACCGGAAGGAATGATTCCAAGAAATTATCATCTTATGTGTATGTTTGGAGCAATGGTACCGATCCCAACTTGTGTGGAGAGTGGAATTTCGAGGCAATACATCTTGTCTTTAGTCCTTTGGTCCTCATTAAGGAATGGAAACGGTTGTATATGCGTCACTTTGTAAAGATGACAACCAGATTTATGAAGGAGTTCCGTGGGCCTCATTCAATGTCAAGAGTGGAAATTTATGAATCATTCTTCCATCAAGGAGCGGTTGCCAAAACGGTTCCTCAACCCTCTGAGGCGTGCCTTACCACTCTCAAGCTACACCAAGAGAATTTCTCGGACGACATTCAGGCGAAGGCAATTCTTGTGCCTAATAACCTCGTCCAGACGAAGCTGGTCCCTCCACCAGTTCATTGCACATTTGACTTGGTTGAGGCTCCAGCTTGCTGCACACCTGACGCATCGCCAGCTTGTCGCTCTTTAGACCTACCACCAACTCATATCTTGCCTGTCCGCAGTCAAGTTAGTTGTTCACCTGAGCTTGGTCGTTCTCAAACTTGTCAACCTACTAAACCTAAAGACATGGCCAGAGCTCGACGAATCATCCATCTCGTCCATAACGATGTGCAACACGAGGGGGTTGTTGGGACTAAGATGGCCACAACAGGTTTTCAGCAGGTTGAGCTTGTGGAGTCCTCGAGGAAGGATCGTGCCAAGGTAAAGGTGACCGTGCCAGAGAATTGCAACAACATGCAATCAATTGTGAATGAGAATCCTGCGCGTGAGTTGGTCGGTAACTGCTATGTTGGAATTGCGGATTACTTCGCTAGGCGACGAGAGCTAAATTCATCCAAAGACCCTTTTACCTTACTTCACCAAGCTACCCATGATGCAACTCATGCTGCCAAGTTGATGGACGAGGCAACGAAGGCTAAGTCTGAGCTCATGGATGTGAGGAAGGAGCTTGAGAAGGCGAGAGCCCTCTTGCGAGTTAAGGAGGAGGCTCTAAAGGTTGAGCAGGAGGCCACGAGTTATGAGCAAAAGGCGCGCGTCAAAGCTGAGACTGAGCTGAGGTCAACTCAAGAGAAGCTAGACAACCCGCGCTTCTTAGAGGATGCTTTCAAGGACATGGAAGCCTTCAACGACTTTGAGAGGAAGGTTCAAGAAGAGGGCTTGGAGTTCGCCCTCATTTGTGTCGAGGCCCAGTTCCCTGAGTTCGATAGGAGGAAGATCGTTGATGCCTTCAAACGGTCTTGGTTGCCGTTGACAGATGCACATGAAAACCACTTCAAGCACTTAATTTCTCAAGGGATCCCTCCCCATGAGGCTATGGACCAAGTCCTTTGTGGACGAACCCTGTTCGATCGTTCATGTTGGGGATCGTTGGAGGTCGAAACTGAGCCTACATGGGTGGTCGAGATTTCCCCAATGTAG 1656 49.46 MSSTAPSPTPVRVAASPPLESLRLTRVFVYGSLLADEVVKVLFGRVPQSFPAVLDGYQRFSIRGRVYPAILPVENKRVTGRNDSKKLSSYVYVWSNGTDPNLCGEWNFEAIHLVFSPLVLIKEWKRLYMRHFVKMTTRFMKEFRGPHSMSRVEIYESFFHQGAVAKTVPQPSEACLTTLKLHQENFSDDIQAKAILVPNNLVQTKLVPPPVHCTFDLVEAPACCTPDASPACRSLDLPPTHILPVRSQVSCSPELGRSQTCQPTKPKDMARARRIIHLVHNDVQHEGVVGTKMATTGFQQVELVESSRKDRAKVKVTVPENCNNMQSIVNENPARELVGNCYVGIADYFARRRELNSSKDPFTLLHQATHDATHAAKLMDEATKAKSELMDVRKELEKARALLRVKEEALKVEQEATSYEQKARVKAETELRSTQEKLDNPRFLEDAFKDMEAFNDFERKVQEEGLEFALICVEAQFPEFDRRKIVDAFKRSWLPLTDAHENHFKHLISQGIPPHEAMDQVLCGRTLFDRSCWGSLEVETEPTWVVEISPM 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24133792 24141997 - ClG42_08g0140500.10 Clacu08g1405 255747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1405 551 PANTHER AIG2-LIKE PROTEIN D 23 80 IPR045038 -
Clacu08g1405 551 Pfam Gamma-glutamyl cyclotransferase, AIG2-like 27 80 IPR009288 -
Clacu08g1405 551 Gene3D - 101 162 - -
Clacu08g1405 551 Coils Coil 375 422 - -
Clacu08g1405 551 CDD GGCT_like 27 80 IPR013024 -
Clacu08g1405 551 Gene3D - 17 82 - -
Clacu08g1405 551 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 26 81 IPR036568 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1405 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1404 Clacu-Chr8:24127874 Clacu08g1405 Clacu-Chr8:24133792 8.30E-43 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g239 . . . . . . . . . . Cma01g01588 . . . . . . Bhi04g01117 . . . Hepe10g0331 . Lcy13g1370 . . . . . . . . . . Cone20ag0620 . . . Cme03g01714 . . . . . . . Bma02g00085 . Cmo01g01636 . Cma09g00542 . . . . Cpe02g00390 . . . . . . . Cla08g01250 Cam08g1708 Cec08g1288 Cco08g1409 Clacu08g1405 . Cre08g1189 Lsi08g01113 Csa02g02303 . Cme04g00316
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016029 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 7