Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1406 ATGGATCTCAACATGGATCTTAATGCTCCTCACTCCATGGGTACCACCATCATCGGCGTCACATACGACGGCGGCGTTGTCCTCGGTGCCGATTCTCGTACCAGCACCGGTGTCTATGTGGCTAATCGTGCATCAGACAAGATTACAAAGCTCACTGACAACGTCTATGTTTGTCGGTCTGGCTCGGCTGCAGATTCTCAAATTGTCTCTGATTATGTGCGTCACTTCCTTCATCAGCATACGATACAGCTTGGCCAGCCTGCGACTGTTAAAGTGGCTGCTAACCTTGTCAGGCTATTAGCATATAACAACAAGGATATGTTACAAACTGGCCTTATTGTTGGTGGATGGGACAAGTATGAGGGTGGTCGAATCTATGGTATTCCTCTTGGTGGAACAATAATAGAGCAGCCATTTGCTATTGGAGGATCTGGCTCCAGTTACTTGTATGGGTTTTTTGATCAAGCATGGAGAGAAGGAATGACCAGGGAAGAAGCTGAGCAATTGGTGGTTAAGGCCGTTTCTCTTGCCATTGCCCGAGATGGTGCTAGTGGTGGTGTTGTCCGTACTGTTACCATAAATTCCGAGGGAGTGACAAGAAAATTCTATCCTGGTGATCAGCTACCGCTCTGGCACGAGGAATTAGAGCCTAAAAATTCGTTACTGGATGTGCTGAATGCTTCTAGCCCCGAACCGATGAACATATAA 708 47.18 MDLNMDLNAPHSMGTTIIGVTYDGGVVLGADSRTSTGVYVANRASDKITKLTDNVYVCRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKDMLQTGLIVGGWDKYEGGRIYGIPLGGTIIEQPFAIGGSGSSYLYGFFDQAWREGMTREEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVTRKFYPGDQLPLWHEELEPKNSLLDVLNASSPEPMNI 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24143359 24147469 - ClG42_08g0140600.10 Clacu08g1406 255748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1406 235 CDD proteasome_beta_type_6 15 202 - -
Clacu08g1406 235 PANTHER METALLOPROTEASE TLDD 5 204 IPR023333 -
Clacu08g1406 235 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 10 215 IPR029055 -
Clacu08g1406 235 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Clacu08g1406 235 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Clacu08g1406 235 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Clacu08g1406 235 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro)
Clacu08g1406 235 FunFam Proteasome subunit beta 15 214 - -
Clacu08g1406 235 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Clacu08g1406 235 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839(InterPro)|GO:0051603(InterPro)
Clacu08g1406 235 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 214 IPR029055 -
Clacu08g1406 235 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1406 K02738 - - csv:101208696 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1406 Clacu-Chr8:24143359 Clacu09g0956 Clacu-Chr9:8942057 3.40E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g240 . . . . . . . . . Cmo12g00227 . . . . Sed08g1434 . . Bhi04g01115 Tan02g2596 Cmetu01g1445 . Hepe10g0330 . Lcy13g1369 . . . . . . . . . . Cone20ag0621 . . . Cme03g01712 . . Bda01g00957 . . . Bma01g01350 . . . . . Cma12g00273 . . . . . . . . . . . Cla08g01251 Cam08g1709 Cec08g1289 Cco08g1410 Clacu08g1406 . Cre08g1190 . Csa02g02304 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005086 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 2 41