Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1410 ATGTGGAGTCAGAAGCAATCAATTGGTGGTAAGGAAAGGAAAGAGCTGGCCACTGGCAATCAATTAGTGGGAATCGCCATTGACAAGGATAAAGGAAGTCAAGTTGCTCTCAAATGGGCCACTGAGAATCTCCTTGTAAAGGGCCAAACTGCCATTCTCATCCACGTTAAACTCCGACCTTCCTCCTATCCTGGCTCTTCTCTCGCTACCCCTAAGGTGATGTCGGCATCTGATGCTGGCAGTGGCAATGGCAATGTTATGGTAAGCAAGGATATGGATCCGAGCACAAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACGCGTAAAGATATATTTTGCAAAGACATCGTCCTTGAAGATTTAGACGTTGCAAAAGCGTTGATCGAATATGTCACTCAGGCTGGAATTGAGAATTTGGTTGTTGGTGCCACGGCTAAAAGTGGCTTCTTGAGAAGATTCAAGACGACAGATATTCCAGGCAGTGTTGTCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGGAAAATCCAAACAATGCGATCAGCCTCACGTCCTGCTCCCGCTTCGTCTCCTCTACGAAGTTTATTGCTGAGCCAAGCTGGTATCAAATCACATTCAGCAGAGTCACCAGTTCCTCAGATTCAAAGACCTGAAAAGCCTCCCCTTGAAGCAGCACGTAGATCTCAGGACAACATCGAGTTCAGGTCGCCATTCACTAGGAAAGGCTACAATGGAAAAATGCCAGGGGAAGTCAGTCAGCCAGATACTGATATTTCTTTCGTTAGCTCGGGAAGGCCGAGTGTTGATAGATTATTCCCTACATTGTATGACAACCTGGATACAGGAAGGGTTCCCCCGCGGCTGTCCAGTGGCAACGATGCTGATATATACAATAGCTTCGAGTCACAGCAGTTCGGACGCAAATCATTGGATGTAAACTATCCACCTGAATTTTTATCGGTCTTCTCAGAAGGTGACAGATTGTCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAAATGAGGAGGCTGAAGCTGGAACTAAAGCAAACCATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTAACAGCTAAACAAAAGGCAATAGAGCTTCAACGATGGAAATCTGAGGAAGAGCGTAGAATAGAGGAGGCAAGACTTGCAGAGGAAGCTGCATTAGCGATGGTTGAGCAGGAAAAGGCGAAGTCTCGAGCTGCTATTGAGGCTGCTGAGGCAGCTAAAAGGATCGCTGAGTTGGAAGCACAGAAGAGAATTAATGCGGAAAAGAAAGCATTCAAGGAAGCAGAAGAGAAGAAGAAGGCATTAGATGCTTTGGCAAACAATGATGTCAGGTATCGGAAGTACTCAATTGACGAGATTGAAACTGCTACTGAGTTTTTTTCAGAATCTTTAAAGATTGGAGAGGGAGGTTATGGCCCTGTTTATAAAGGTTATTTGGACCACACACCAGTTGCAATTAAGGTCTTACGTCCGGATGCGGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTTGAAGTACTAAGCTGCATACGACATCCTAACATGGTTCTTCTCCTTGGAGCATGCCCCGAATATGGCTGCTTGGTCTATGAGTTCATGGCACATGGTAGCTTGGATGACTGCCTCTTTCGCCGAAGAGAAAACTCAAAACCTCTTTCTTGGCAACGTAGATTCAAAATTGCAGCTGAAATTGGCACTGCCTTGTTGTTCCTCCACCAGACTAAGCCTGAGCCTCTTGTGCACCGTGATTTGAAACCGGCCAACATCTTGCTCGATCGTAACTATGTTAGCAAGATTAGCGACGTTGGTTTGGCCAGGCTTGTTCCCCCATCTGTAGCCGACAGTGTGACACAATATAGAATGACTTCAACTGCTGGCACATTCTGTTATATCGATCCCGAGTATCAACAAACGGGCATGCTTGGTGTAAAGTCCGACATATATTCATTGGGAATCATGTTTTTGCAGTTGATTACAGCAAGAGCACCCATGGGATTGACTCACCATGTGGGAAGAGCTATTGAGAAAGGGACTTTGTCGGAAATTCTTGATCCATCTGTTACCGATTGGCCAGCTGAAGAAACGTTATGCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAAGACCGACCTGATCTCGGTAAGGTTGTTCTCCCAGAGCTCATCAGATTTCAATCGCTAGCCGAAGCCAGCATGTACACACTGGTGAAGGACGGTGTTAGCAGCCCTGTGTTCAGCCACAGCCAGGACGGCGAATGTTTTTCCTCACAATCTAGCGATAGACATGGAGTCTTATCACGCTCAGCGCCGTAG 2364 46.24 MWSQKQSIGGKERKELATGNQLVGIAIDKDKGSQVALKWATENLLVKGQTAILIHVKLRPSSYPGSSLATPKVMSASDAGSGNGNVMVSKDMDPSTRDLFLPFRCFCTRKDIFCKDIVLEDLDVAKALIEYVTQAGIENLVVGATAKSGFLRRFKTTDIPGSVVKGAPDFCNVYVISRGKIQTMRSASRPAPASSPLRSLLLSQAGIKSHSAESPVPQIQRPEKPPLEAARRSQDNIEFRSPFTRKGYNGKMPGEVSQPDTDISFVSSGRPSVDRLFPTLYDNLDTGRVPPRLSSGNDADIYNSFESQQFGRKSLDVNYPPEFLSVFSEGDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALAMVEQEKAKSRAAIEAAEAAKRIAELEAQKRINAEKKAFKEAEEKKKALDALANNDVRYRKYSIDEIETATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMAHGSLDDCLFRRRENSKPLSWQRRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITARAPMGLTHHVGRAIEKGTLSEILDPSVTDWPAEETLCFAELALKCAELRRKDRPDLGKVVLPELIRFQSLAEASMYTLVKDGVSSPVFSHSQDGECFSSQSSDRHGVLSRSAP 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24185947 24190900 + ClG42_08g0141000.10 Clacu08g1410 255752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1410 787 SMART serkin_6 474 739 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1410 787 CDD STK_N 22 179 - -
Clacu08g1410 787 MobiDBLite consensus disorder prediction 768 787 - -
Clacu08g1410 787 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 446 546 - -
Clacu08g1410 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1410 787 Pfam Protein kinase domain 477 729 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1410 787 Coils Coil 333 360 - -
Clacu08g1410 787 PANTHER OS02G0152300 PROTEIN 25 754 IPR051348 -
Clacu08g1410 787 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 25 171 - -
Clacu08g1410 787 SUPERFAMILY Protein kinase-like (PK-like) 458 734 IPR011009 -
Clacu08g1410 787 Coils Coil 400 455 - -
Clacu08g1410 787 Gene3D HUPs 21 176 IPR014729 -
Clacu08g1410 787 Gene3D Phosphorylase Kinase; domain 1 452 546 - -
Clacu08g1410 787 ProSiteProfiles Protein kinase domain profile. 474 739 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1410 787 MobiDBLite consensus disorder prediction 209 232 - -
Clacu08g1410 787 Gene3D Transferase(Phosphotransferase) domain 1 547 749 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2841 Clacu-Chr5:35647434 Clacu08g1410 Clacu-Chr8:24185947 5.80E-294 dispersed
Clacu08g1410 Clacu-Chr8:24185947 Clacu11g1321 Clacu-Chr11:22504247 9.20E-215 dispersed
Clacu08g1410 Clacu-Chr8:24185947 Clacu08g1155 Clacu-Chr8:21603546 4.90E-200 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73771 PF00069 Pkinase 2.30E-38 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1410 - - - 0.0