Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1434 ATGTATAACGGTATTGGTTTACAAACTCCGAGAGGGTCTGGCACTAATGGGTACATTCAGACAAACAAGTTCTTTGTGAGGCCGAAGACCGGAAAGGTTGCTGAAAGCTCTAGAGGATTCGAAGAAGATCAGGGCACTGCTGGAGTTTCAAAGAAACCGAATAAAGACATTCTCGAACACGATCGCAAGCGTCAGATTGAACTCAAACTTGTCATACTTGAGGACAAGCTCACTGACCAAGGTTATACCATGGATGAAATTTCCGAGAAGTTAAAGGAGGCTCGTGAGACTTTGGAAGCTGCTTCAGAGGAAAAAGATGGAGCTTCTGCCATCGTACTTGCAGATAAGAGGGTATCAGATACACAGACTCACCAAATTGCTGCAAGAAAGGAGGAGCAGATGAAAACATTTAGAGCTGCTCTTGGGTTGGGCTCATTGGACGATACTGAACAGGCTAAAGAAGAGATTTCTGATCCATCAAGAAATAGAAGAGAGGGTCAGAATGCTGATATTAAGCGTCATGAGAAGTCTGAACATTCTTTCTTGGATAGAGAATTGAACTGGAAAAAGCATGGCACTGAAGATCAGTATGATGATAAGGATGACAAAAAAAGGGTTTCAAAAGAGTTGAAAGGTCATCAGAAGGATAGAAAAAGAAGGTCCAAGGATGATTCTTCTGACACCGATTCTGGTGAGCGTAAGGGAACCAAGAAGAACTTGAGAGATAGTATAAAGAATGATTCTGAAAGTGACCTTGACAGTGATGTTGGCAACAAATATGTCGCGGCAAGGAAGTCTATAAAAAATAGAAGGCACGATAGTGATGATTCTTCTGATCCTGATTCTGGTGGTGAGCGCAACGGAACCAAGAAGCACATGAGAGATAAACGGAGAGATGATCCTGAAATTGACTCAGACAGCGATTTTGACCAGAAATATATCACCTCAAGGAAGCATAAGAAAAACAGAAGGCATGATAGTGATGATTCTTCTCATACTGATTCTGGTGGAGAGCACAAGAAAACCAAGAAGAATATGAGAAATTATCAAAGAGATCATGGAAGTCATCCTGACAGTGACGTTGATAAGAAATACACCTCAAAGAAGCAGGCAAAAAACACAAGGCATGATAGTGATGATTCTGATTCGTTTACAGATGGTGATAAGTTTGGGATGGGCAGCCACAAGAAAGGATCTGGTAGACATAAAAGTCAAAAGGTGAAAAAGCAAAGAAGCTGGAAACAGGAGTCTACTGATGAATCCAATTCTGACAGTGGGATTGATGATAAACGCAGAAAACTGAAGCACAAAAACCAGCATGGTAAAAGATATGGGGTAGAAAGTGACAGCTCTGACCATGACAGTTCTGATTCTGATGTAGGTCGCAAGAAGAGTACGCATAGGCATGACAGCAAGCGTACAGGAAAGAGGAGGGTAGATAGTGAATCCGATTCTGAAAAGTCGAGAAAGCATCCTAAGAAAGATGTTGGCAGACGCGGACATGATATTGATGATGAAAAAAGTGGTGATAACAGCTCTAGCAGTGATGAAATAGTGAAGAGGCGCAGAGGTAGGAGGCACAATACTGATGATGAATCTGAAGAAGGTGAATATTTTGGTAGAAGTGATAGGGTAGACACAAAGGGAAAGAAAATAGCTGCTAAAAGGCAACATGATGACAGTGATAATTCTGATGATAGCCTAGCAGTTGGTAGAAAGGGCAATGATAAACACAAGAGAGCTAAGAAATATTCGACGGGTGATGGCTTTGGTCTAGAGAAGGGAGTAAAATCAAGCAATGGAGCACGTGCAAGAGGAAAAGGGAACTTAAATCATTCAGAAGGTAGGAACCACGATACGGATGATAAATCTGAAGAAGAAGAAGAAGAAGGTGAATATTTTGATAGAAGTGGAAAGCTAGCGACAAAAGGTAAAATAGATGCTAAAAGGCAACACGATGACAGTGATAATTCTGATGATAGCCTTGCAGTTGATAGAAAGGGCAATGATAAACACAAGAGAGCTAAGAAATATTCGTCGGGTGATGATTCTGATCTAGAGAAGGGAGTAAAATCAAGTGGTGGAGCTCGTGAAAAAGGAAAAGGGAACTTTAATCATGCAGATGGTTTGGACAAGTTTAAGAAAGATTCCATCAATGAGTTCAGCCATGCACATACAGATACAATGAAAAGCAAGAGAAAGTTTGATGAAGGTGGTGAAAATGAGCAGCAGCTAGAGGCAAAGCCTATAAATCGCAATTCTACAAGAGAGTCAGATTTCCATGGCAACCCCAAGAAAGATTTCAAAAATGATTCTGAATCAATCCGAAGAGCACACAGTGGCTGGTATGATGAAACAAGGGATCGGCGGTACAGGGAAGATCCCAAAATTGACTCTGAATCAAACTCTAGATCACACTATAGTGCACGTGATGAGGGTGACGACAGAAAGTCAACTCGAACAGGAAGCAGATATAATGAAGAAACAGAGCATGGAAGTAGACATCACCGCAAGGCTAACGAGTCTCATCATCGCAGCAGGACTGATCAAGATACTGACGAGGAAAAAAGGCATAGCAGATATGAGGAGCCTAGAGGGAGAAAACACGAAAGAGACGAAGGTCTAAAATCGAGCAGGGAAGTTGAAAGAGGGGAGTATCAACCAAGTAGCAGGCAGAGATCTGAGAAAGATTATGAAACTAGAGAATCTACAAGAGATCGGGATGATTCCAGAAAGAGGGCCAGATATGATTCTCGATCAAGCAGACGTGATAATTATTAG 2781 41.53 MYNGIGLQTPRGSGTNGYIQTNKFFVRPKTGKVAESSRGFEEDQGTAGVSKKPNKDILEHDRKRQIELKLVILEDKLTDQGYTMDEISEKLKEARETLEAASEEKDGASAIVLADKRVSDTQTHQIAARKEEQMKTFRAALGLGSLDDTEQAKEEISDPSRNRREGQNADIKRHEKSEHSFLDRELNWKKHGTEDQYDDKDDKKRVSKELKGHQKDRKRRSKDDSSDTDSGERKGTKKNLRDSIKNDSESDLDSDVGNKYVAARKSIKNRRHDSDDSSDPDSGGERNGTKKHMRDKRRDDPEIDSDSDFDQKYITSRKHKKNRRHDSDDSSHTDSGGEHKKTKKNMRNYQRDHGSHPDSDVDKKYTSKKQAKNTRHDSDDSDSFTDGDKFGMGSHKKGSGRHKSQKVKKQRSWKQESTDESNSDSGIDDKRRKLKHKNQHGKRYGVESDSSDHDSSDSDVGRKKSTHRHDSKRTGKRRVDSESDSEKSRKHPKKDVGRRGHDIDDEKSGDNSSSSDEIVKRRRGRRHNTDDESEEGEYFGRSDRVDTKGKKIAAKRQHDDSDNSDDSLAVGRKGNDKHKRAKKYSTGDGFGLEKGVKSSNGARARGKGNLNHSEGRNHDTDDKSEEEEEEGEYFDRSGKLATKGKIDAKRQHDDSDNSDDSLAVDRKGNDKHKRAKKYSSGDDSDLEKGVKSSGGAREKGKGNFNHADGLDKFKKDSINEFSHAHTDTMKSKRKFDEGGENEQQLEAKPINRNSTRESDFHGNPKKDFKNDSESIRRAHSGWYDETRDRRYREDPKIDSESNSRSHYSARDEGDDRKSTRTGSRYNEETEHGSRHHRKANESHHRSRTDQDTDEEKRHSRYEEPRGRKHERDEGLKSSREVERGEYQPSSRQRSEKDYETRESTRDRDDSRKRARYDSRSSRRDNY 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24396087 24400511 - ClG42_08g0143400.10 Clacu08g1434 255776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1434 926 MobiDBLite consensus disorder prediction 410 432 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 30 56 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 441 465 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 216 254 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 752 836 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 140 926 - -
Clacu08g1434 926 Gene3D - 58 102 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 1 20 - -
Clacu08g1434 926 PANTHER SERINE/ARGININE REPETITIVE MATRIX 2 1 922 IPR051372 GO:0005634(PANTHER)
Clacu08g1434 926 MobiDBLite consensus disorder prediction 843 926 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 475 574 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 267 315 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 322 395 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 148 209 - -
Clacu08g1434 926 Coils Coil 84 111 - -
Clacu08g1434 926 CDD cwf21_SRRM2-like 53 98 - -
Clacu08g1434 926 MobiDBLite consensus disorder prediction 633 743 - -
Clacu08g1434 926 Pfam cwf21 domain 58 100 IPR013170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1434 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g265 . . . . . . . . Cmo05g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00585 Cpe11g00563 . . . . . . . . Cla08g01279 Cam08g1737 Cec08g1319 Cco08g1440 Clacu08g1434 . Cre08g1221 . Csa02g02337 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005994 2 3 0 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 38