Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1440 ATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAATATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTTCTGTGGCTCTACAGTCTGAATTCAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATCCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTTCTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCAGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCTGGGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAATCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGCTTCATTAAGATGAAAATTTTGGATATTCTTGCTACTTATTCTTATTTTATCTCAGTGATTGATAAAACTGGGGCAGAACAGAGATTAGGAAGGAAAAATAGATCAGGTTGCATGCTCAGGCTGGACAATAGGTGTGCATGGACGCAACAGCCTGTGGAACAGAACATGTCACTGATCGATGAGAACATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAATATCTAAGCAGTATATCATCAAACAGACGGAAGATCTGGATTCTAGTCAAGTATAATGTTGATAATGTGTCAGTTCGTGTTTATGCCTTCAACTTCTCTTCTAATTTTGGGAACGCATCGCTGAAGAACTCAAACGCATCAAATTACTACAGTTTGAAGAGCACTCTTTATCGGTCTCCAGAAGGATGGAATTGCCTTAAATGA 1299 42.26 MAVKTAQSFRDRTLEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSSVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTSSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAISFIKMKILDILATYSYFISVIDKTGAEQRLGRKNRSGCMLRLDNRCAWTQQPVEQNMSLIDENMDDTLANVEGAQGALLKYLSSISSNRRKIWILVKYNVDNVSVRVYAFNFSSNFGNASLKNSNASNYYSLKSTLYRSPEGWNCLK 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24442216 24447058 + ClG42_08g0144000.10 Clacu08g1440 255782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1440 432 MobiDBLite consensus disorder prediction 170 190 - -
Clacu08g1440 432 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 283 IPR000727 -
Clacu08g1440 432 SUPERFAMILY t-snare proteins 52 283 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu08g1440 432 PANTHER SYNTAXIN 54 380 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu08g1440 432 MobiDBLite consensus disorder prediction 24 46 - -
Clacu08g1440 432 MobiDBLite consensus disorder prediction 209 242 - -
Clacu08g1440 432 MobiDBLite consensus disorder prediction 168 242 - -
Clacu08g1440 432 Pfam SNARE domain 345 381 IPR000727 -
Clacu08g1440 432 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Clacu08g1440 432 CDD SNARE_syntaxin5 249 382 - -
Clacu08g1440 432 Gene3D - 50 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0410 Clacu-Chr7:4666951 Clacu08g1440 Clacu-Chr8:24442216 3.00E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1440 K08490 - csv:101203633 498.049