Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1445 ATGGCATGCGACTCGTTCAAAAAAACTCCATCTCCTTCCCGCTCCTTCTCCCCGCTCCTCCGCCCTGTTCCTCACCCGCTAGCTCCGTCGCCTATGCCCGCCGTCTCATTCCATTTTTATGCACTCAAAGCTATGGCTGACTGGCTGATCGGAGAAAATGTTGGAATGGAGCTTCCAGTGAATGCTAAGTGTAAAGTCATTTCGGTTTTGTTCAATAGCATAAAAATAGGCGGAACATGGTTCTGTGTCAACATGCACATATCTGAGCTCAATTCCTTTTCATATGGTTATAGCCGTGCATTTGCTTGTCCACACACAACAGCTCTGTTGAATATGATGAAAGAAAAGGTTGCTGTCAGAATCACGCGCTCCCAGTCTAATTCCTCAAGCAGACTAGGAGCTAATTCACCTTCATTGCAACTTTCACTCAAAGAATTGCGCAAACGTGGCCATACAGAAGACTCTGAACAAGCACAACTAGATGGAAGTAATGCTTCCACAACTATTACTGTTGGTGTTCGGCGCAAAAGAAGATCAGTGCTCAAGGATGTTACCAACATGTCCTGTGAGAGTAGTAATCTGGGGTGCTTGCATGCTTCTAAAGTTCAGGTGCAAGAGGTTTCACAGATGGAATCACTTGAAGATTCACCCGTTCAAAGGATGGCAGAATCACTAGGTACCTCTCCAGTGATGAGGTCAGACAAACAAGAGACAACACAGGCGAACAAGTTTCAGAGTGTCATAGGATGCAAAAATTGTGCGTTCCCCATGCCTTCAGGATCAAACGACCACCAAATGAAAGTTGAGGCTACGGTTTGTGAGAAATTAAACCATCTCGGTAGTTTGGATGCTATTTCAAACTCAGAAGATCCTCAAGCTTGCACCCTATATGCCAATAATATATATGATACTAATCGTGTTATAGAGCTCGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATATAAACTGATCTCTGACACACTTTACCTCACCGTGAATCTCATTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTTCTTGGTGTCACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTCTCTGTTCCTACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTTCAAGGAAACTTGTGTCGAGTTCGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGATTTCTGCCTTCAGCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGCATCAACCAAATCAACCATGGAACCTGGCTTTAGAGCATTATACCAATTACAATGTCTCCAAGTTAAGAACTTCAGTACTTGCCTTGGAAGATCTAAGATTGAACTCCACAGGTTGCCCTTTAAAAGCCGTATTCCAGAAGTATAGACAACAGAAGTTTGGAAGTGTGGCAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTTCCCCAACCAGACAGATACCTGA 1698 42.76 MACDSFKKTPSPSRSFSPLLRPVPHPLAPSPMPAVSFHFYALKAMADWLIGENVGMELPVNAKCKVISVLFNSIKIGGTWFCVNMHISELNSFSYGYSRAFACPHTTALLNMMKEKVAVRITRSQSNSSSRLGANSPSLQLSLKELRKRGHTEDSEQAQLDGSNASTTITVGVRRKRRSVLKDVTNMSCESSNLGCLHASKVQVQEVSQMESLEDSPVQRMAESLGTSPVMRSDKQETTQANKFQSVIGCKNCAFPMPSGSNDHQMKVEATVCEKLNHLGSLDAISNSEDPQACTLYANNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLISDTLYLTVNLIDRFLSQSYIERHRLQLLGVTCMLIASKYEEVCAPFVEEFCCITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVAQASFKETCVEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNLALEHYTNYNVSKLRTSVLALEDLRLNSTGCPLKAVFQKYRQQKFGSVATLTSTKSVLSAFPNQTDT 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24473222 24482867 - ClG42_08g0144500.10 Clacu08g1445 255787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1445 565 SMART Cyclin_C_2 429 552 IPR004367 -
Clacu08g1445 565 CDD CYCLIN_AtCycA-like_rpt2 429 543 - -
Clacu08g1445 565 SUPERFAMILY Cyclin-like 289 426 IPR036915 -
Clacu08g1445 565 Pfam Cyclin, N-terminal domain 301 427 IPR006671 -
Clacu08g1445 565 Gene3D - 301 548 - -
Clacu08g1445 565 FunFam Cyclin A1 416 548 - -
Clacu08g1445 565 Gene3D - 314 427 - -
Clacu08g1445 565 ProSitePatterns Cyclins signature. 331 362 IPR048258 -
Clacu08g1445 565 Pfam Cyclin, C-terminal domain 429 550 IPR004367 -
Clacu08g1445 565 SMART cyclin_7 433 521 IPR013763 -
Clacu08g1445 565 SMART cyclin_7 336 420 IPR013763 -
Clacu08g1445 565 SUPERFAMILY Cyclin-like 428 553 IPR036915 -
Clacu08g1445 565 PANTHER CYCLINS 283 539 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu08g1445 565 FunFam Mitotic cyclin 6 314 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1445 Clacu-Chr8:24473222 Clacu08g1785 Clacu-Chr8:27240746 4.20E-68 dispersed
Clacu05g1869 Clacu-Chr5:27892746 Clacu08g1445 Clacu-Chr8:24473222 8.50E-110 wgd
Clacu08g1445 Clacu-Chr8:24473222 Clacu09g0236 Clacu-Chr9:2184445 1.80E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1445 K06627 - csv:101211578 770.0