Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1451 ATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTGTCTTCAGATCCTGTGGCTATTGATGCGCCTGGAGGCTTTCTTTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCTAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAAACACAGCCACAACAACAGCAACCACAACACATGCAGATGCTTCTAATGCAGAGACATGCCCAACAGCAGCAGCAGCAGCAGCAACAACAACAGCATCAACAGCAACAACAGCCACAGCAGCAGCAACAACAGACTCAGCAACAACAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGAAATTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGTCAGAATCCCGGATCTGTAAATGCGTTGGCTACAAAAATGTACGAGGACAGATTAAAACTACCTCTTCAGAGGGATTCTCTAGATGATGCAGCTATGAAACAAAGGTATGGAGAAAACGTTGGGCAGCTGTTGGACCCAAATCATGCATCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTGCAGCTGGGGGAATGTCTCCTCAAGTTCAATCTAGGAGCCAGCAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGTCCTGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGGCGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACCGGGCTAGAGCAACTACGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTTCTCAATCATTTCCTCAGCTTCATCAGATGTTGACACCACAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACATCACCTTCTGTTACTGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCTTGCCTCGTGGAGATAGCACAGAAATGATCATTAAGATAAAAATGGCTCAAATGCATCAACAGCAGCAGCAACAGAATAGTAGCCAGCAACAGCAGCAGCATGCTCTTTCTAATCAACAGTCGCAAAGCTCAAACCACAATATGCCTCAGCAAGAAAAAATTGGGGGTGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCTTTTCGTGGAAATGATCAGGTTTCAAAAAATCAGGCTGGGAGAAAGAGGAAGCAGCCAGTGTCATCTTCAGGTCCAGCAAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACCCATACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGATGGCACTGGAACTTTTACATCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTTGTTGAGGATGGGTCTCTTGATGACAACGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATCCTGTAGGGCGCTGCATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTTTTCTCTTGCCACTTTTCATCTGATGGAAAACTGCTTGCTAGTGGTGGCCAGGATAAGAAGGCTGTATTATGGTACACAGAAAATTTAAAGCCGAAAACTTCACTTGAAGAACATACTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGGCTTGCAACTTCATCATTCGATCGAACAGTCAGAGTTTGGGATGCTGACAATCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTACGTCTTTGGACTTCCATCCGAAGAAGGACGACTTTATTTGCTCTTGTGATAGTGATGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTATGGGCCAGATGAGATTTCAACCTCGTCTTGGGAGATACTTTGCTGCTTCTGTAGATAATATTGTATCCATTTTTGATGTTGAGACACAAGCACGTCTGCATTCATTACAGGGACACACCCAAAAGGTTCAGTCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCTGTTCGAGTGTGGACGCTTGCTTCCGGGAATGAGGGCGAATCCATTCATGAGTTGAGCTGTAACGGCAATAAATTCCACTCTTGTGTTTTCCATCCCACCTATTCTACTTTGCTGGTCATTGGATGCTACCAGTCATTAGAGCTTTGGAACACGACTGAGAACAAGACGATGACTCTATCAGCTCATGAAGCTTTAATATCTTCCTTAGCAGTGTCCACGGCATCAGGTCTAGTTGCTTCGGCCAGCCACGACAAGCGGCGTCGACCTTTGCCATTCGATCAGCTTCGCCGGTGCTCGGAAATCCGTGATTTCTTCATTAGAGAGGTTGGCTTCTGGAACTCCCTGCTCCATCAAACCATAACAGAGTTCGTATTTTCCTTGTTCCAGTTGTTTGCTGTCCGTGTAATGTCTGAGGCAAGCAAGAGTCAGGGTACTTGCACCGAGCGCTTGATTGAGGAAACCAAATGTTTACAACCCCTTCAGGTGGATCCCGACAATGGAGTTTCCATGGATATACTAAAGGAGGACATGGATGAACTGAACCAGAGGAAAGTTACAATGGTGAAGGATTTGCAACTTTTACGTGATAGAGTCAATAAGGCGGGTGCTAATGTGGTGCAGAATCTGATGTCATGCTTAAAGACTTTGGAGGATCTCGGAAAGCAGGAATCTGAATTCCTATCTACTTGTAATTCAAAGCGTAGTAAATTGCAAGATGAGATTATCGAGCTGGAGGGAAGATTAACCAGTGACGGTGAATGCTCAAATTTCTTGGATAGCTTAGATGATTTGATTAGTGAATCTGAGGAGGAATTGAATTCCGTAAAGAAGGCACTCAGATCGAGCTTGAGGGAAACACTAGCATTAAAGAGGCTTCTTGATGATGTGCCAACCCAAACTGAACTCATCCAGTACGAGCGCCGATTTTCGGAGCTATACATTAACATCCAGGACAAACTTAGGCAAACACGCAGATACTATGCAACCTACAATGCACTCTTGGAGATAAAGGATCTGATGTTAAAGGAGACATCCTTATTGAATTCCATAAGTTCACAGTTTCAAGATGCCATAGCCAGCTCCACAAGTCAAATGAAACTTATTGATTCCATGGAGGGAATTCTGAAAGGCATTCAACAGAAACTAGATAAGGTGCATCTCTCTCATCAAGAAGAGCAGCAGGTCTGCAATGCTTTGAAAGAGAAATATGCTGCAGCAACTGCTGAGCAAAGACGTTGCTATACACTCTTAAAAGCTTTCCAGGAGGAATGTGCAAAGAACGAGAAGCTTCGGACCCAAAATTTCATGTGA 3729 44.36 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGNSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGAAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKPFIQASQSFPQLHQMLTPQHQQQLMLAQQNLTSPSVTDDGRRLRMLLNSRMAKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDSTEMIIKIKMAQMHQQQQQQNSSQQQQQHALSNQQSQSSNHNMPQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQAGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVFSCHFSSDGKLLASGGQDKKAVLWYTENLKPKTSLEEHTSMITDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVTSLDFHPKKDDFICSCDSDGEIRYWNITNGSCAAVFKGGMGQMRFQPRLGRYFAASVDNIVSIFDVETQARLHSLQGHTQKVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYQSLELWNTTENKTMTLSAHEALISSLAVSTASGLVASASHDKRRRPLPFDQLRRCSEIRDFFIREVGFWNSLLHQTITEFVFSLFQLFAVRVMSEASKSQGTCTERLIEETKCLQPLQVDPDNGVSMDILKEDMDELNQRKVTMVKDLQLLRDRVNKAGANVVQNLMSCLKTLEDLGKQESEFLSTCNSKRSKLQDEIIELEGRLTSDGECSNFLDSLDDLISESEEELNSVKKALRSSLRETLALKRLLDDVPTQTELIQYERRFSELYINIQDKLRQTRRYYATYNALLEIKDLMLKETSLLNSISSQFQDAIASSTSQMKLIDSMEGILKGIQQKLDKVHLSHQEEQQVCNALKEKYAAATAEQRRCYTLLKAFQEECAKNEKLRTQNFM 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24524031 24541595 - ClG42_08g0145100.10 Clacu08g1451 255793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1451 1242 MobiDBLite consensus disorder prediction 250 270 - -
Clacu08g1451 1242 SUPERFAMILY WD40 repeat-like 607 891 IPR036322 GO:0005515(InterPro)
Clacu08g1451 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 690 - -
Clacu08g1451 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 654 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 MobiDBLite consensus disorder prediction 414 540 - -
Clacu08g1451 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 698 736 - -
Clacu08g1451 1242 ProSitePatterns Trp-Asp (WD) repeats signature. 674 688 IPR019775 -
Clacu08g1451 1242 Coils Coil 1195 1215 - -
Clacu08g1451 1242 MobiDBLite consensus disorder prediction 238 293 - -
Clacu08g1451 1242 Gene3D - 597 746 IPR015943 GO:0005515(InterPro)
Clacu08g1451 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 820 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART Lish 8 40 IPR006594 GO:0005515(InterPro)
Clacu08g1451 1242 CDD WD40 609 894 - -
Clacu08g1451 1242 PANTHER TRANSCRIPTION ACTIVATOR MSS11 3 892 - GO:0005634(PANTHER)
Clacu08g1451 1242 Gene3D - 747 900 IPR015943 GO:0005515(InterPro)
Clacu08g1451 1242 Pfam CCDC93 coiled-coil domain 980 1238 IPR019159 -
Clacu08g1451 1242 Coils Coil 1064 1091 - -
Clacu08g1451 1242 MobiDBLite consensus disorder prediction 459 519 - -
Clacu08g1451 1242 Coils Coil 1033 1053 - -
Clacu08g1451 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 690 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515(InterPro)
Clacu08g1451 1242 Pfam WD domain, G-beta repeat 776 810 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 Pfam WD domain, G-beta repeat 610 644 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 Pfam WD domain, G-beta repeat 862 891 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 Pfam WD domain, G-beta repeat 650 687 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 740 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART WD40_4 648 687 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART WD40_4 817 856 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART WD40_4 858 905 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART WD40_4 734 770 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART WD40_4 691 731 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART WD40_4 606 645 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 SMART WD40_4 773 811 IPR001680 GO:0005515(InterPro)
Clacu08g1451 1242 MobiDBLite consensus disorder prediction 414 452 - -
Clacu08g1451 1242 Coils Coil 976 1003 - -
Clacu08g1451 1242 Pfam LisH 10 36 IPR006594 GO:0005515(InterPro)
Clacu08g1451 1242 MobiDBLite consensus disorder prediction 89 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0381 Clacu-Chr5:3264993 Clacu08g1451 Clacu-Chr8:24524031 2.90E-154 dispersed
Clacu06g1122 Clacu-Chr6:21260057 Clacu08g1451 Clacu-Chr8:24524031 1.50E-142 dispersed
Clacu07g1284 Clacu-Chr7:27630950 Clacu08g1451 Clacu-Chr8:24524031 6.60E-09 dispersed
Clacu08g1451 Clacu-Chr8:24524031 Clacu11g0552 Clacu-Chr11:5181065 3.40E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48198 PF00400 WD40 1.70E-05 CL0186 Clacu TR