Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu08g1455 | ATGTCCAGCGCCGCCGTGCTTGCACGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATATCTCCGTACACCTTCTCCGCCATCGGTATCGCCATCGCCATTGGGGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATATGGTGTCATTGTTGCCATTATCTTACAAACCAAGTTAGAGAGCGTGTCAGCATCTCAGATATATGCACCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTCGTGAAGATTCTTGTAATTGAGATCTTTGGCAGTGCACTTGGGTTGTTTGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA | 549 | 47.91 | MSSAAVLARSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG | 182 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 24593408 | 24594563 | + | ClG42_08g0145500.10 | Clacu08g1455 | 255797 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu08g1455 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 25 | 87 | - | - | |
| Clacu08g1455 | 182 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 10 | 175 | - | GO:0016021(PANTHER) | |
| Clacu08g1455 | 182 | FunFam | V-type proton ATPase proteolipid subunit | 23 | 178 | - | - | |
| Clacu08g1455 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 104 | 172 | IPR035921 | - | |
| Clacu08g1455 | 182 | Gene3D | - | 23 | 177 | IPR035921 | - | |
| Clacu08g1455 | 182 | Pfam | ATP synthase subunit C | 112 | 171 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Clacu08g1455 | 182 | Pfam | ATP synthase subunit C | 28 | 87 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Clacu08g1455 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 21 | 90 | IPR035921 | - | |
| Clacu08g1455 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 107 | 171 | - | - | |
| Clacu08g1455 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 67 | 91 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Clacu08g1455 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 123 | 149 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Clacu08g1455 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 41 | 65 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Clacu08g1455 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 150 | 173 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu08g1455 | K03661 | - | - | csv:101221052 | 323.939 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu11g1754 | Clacu-Chr11:28716475 | Clacu08g1455 | Clacu-Chr8:24593408 | 7.10E-13 | transposed | |
| Clacu05g1865 | Clacu-Chr5:27870995 | Clacu08g1455 | Clacu-Chr8:24593408 | 3.20E-78 | wgd |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Clacu08g1822 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Clacu02g2138 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.8 | 0.0e+00 | 1347.0 | |
| Clacu08g1622 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Clacu02g0509 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.1e-292 | 1002.7 | |
| Clacu02g0509 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.5 | 0.0e+00 | 1195.3 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 8.2e-299 | 1023.1 | |
| Clacu02g0509 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 74.2 | 0.0e+00 | 1192.6 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 9.1e-298 | 1019.6 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu08g1611 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu08g1612 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu11g1754 | . | 110 | 273 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Clacu08g1611 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu08g1612 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 111 | 273 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 109 | 230 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Clacu08g1611 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu08g1612 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu05g1865 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.4e-70 | 262.3 | |
| Clacu08g1455 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu05g1865 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 6.1e-73 | 270.8 | |
| Clacu08g1455 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 | |
| Clacu08g1822 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Clacu03g0182 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.8 | |
| Clacu03g1772 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Clacu02g0417 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Clacu10g2006 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.7e-37 | 151.0 | |
| Clacu01g0815 | . | 241 | 616 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 1.2e-180 | 629.4 | |
| Clacu09g2243 | . | 1021 | 1281 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.8e-118 | 420.2 | |
| Clacu10g1624 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.0e-206 | 715.3 | |
| Clacu08g1611 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu08g1612 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 111 | 273 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu02g0417 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.8e-270 | 927.5 | |
| Clacu05g1557 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.6e-64 | 242.7 | |
| Clacu02g0417 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.3e-266 | 912.5 | |
| Clacu02g2138 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.8 | 0.0e+00 | 1347.0 | |
| Clacu08g1622 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Clacu02g0509 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.1e-292 | 1002.7 | |
| Clacu10g1482 | . | 120 | 461 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Clacu05g1557 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 2.7e-90 | 328.6 | |
| Clacu09g0169 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Clacu02g0417 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Clacu02g0417 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.8e-270 | 927.5 | |
| Clacu02g0417 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.3e-266 | 912.5 | |
| Clacu01g0815 | . | 241 | 616 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 1.2e-180 | 629.4 | |
| Clacu09g2243 | . | 1021 | 1281 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 7.8e-118 | 420.2 | |
| Clacu05g1557 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 2.7e-90 | 328.6 | |
| Clacu05g1557 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 8.7e-76 | 280.4 | |
| Clacu05g1557 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.0 | 1.6e-64 | 242.7 | |
| Clacu03g1772 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Clacu10g2006 | . | 62 | 169 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.7e-37 | 151.0 | |
| Clacu10g1624 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.4 | 2.0e-206 | 715.3 | |
| Clacu02g2138 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.8 | 0.0e+00 | 1347.0 | |
| Clacu08g1622 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 4.1e-298 | 1020.8 | |
| Clacu02g0509 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 1.1e-292 | 1002.7 | |
| Clacu02g0509 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1233.8 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.5 | 0.0e+00 | 1195.3 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 8.2e-299 | 1023.1 | |
| Clacu02g0509 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1235.7 | |
| Clacu08g1622 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 74.2 | 0.0e+00 | 1192.6 | |
| Clacu02g2138 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 9.1e-298 | 1019.6 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Clacu11g1754 | . | 109 | 230 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Clacu08g1611 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu08g1612 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Clacu08g1611 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu08g1612 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu11g1754 | . | 136 | 273 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Clacu08g1611 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu08g1612 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Clacu11g1754 | . | 110 | 273 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Clacu08g1611 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu08g1612 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu11g1754 | . | 111 | 273 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Clacu05g1865 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 6.1e-73 | 270.8 | |
| Clacu08g1455 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Clacu05g1865 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 82.5 | 2.4e-70 | 262.3 | |
| Clacu08g1455 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Clacu10g1482 | . | 120 | 461 | Primary Pumps ATPases(2) | AT3G28710 | 95.0 | 2.4e-194 | 674.9 | |
| Clacu10g1482 | . | 120 | 461 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Clacu03g0182 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.8 | |
| Clacu08g1822 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.2 | 0.0e+00 | 1628.2 | |
| Clacu03g0182 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0001947 | 2 | 4 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 2 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 3 | 3 | 2 | 66 |