Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1462 ATGGGCAGTCCAGTCCAGTCCATGATAATGTTTTGGCCCTTTTCAACTGGCAGGCCTGCCATTGTTGAGAGCACCAGAGAAACCATTCTGCACCACAATTCCTTCATGGGTACTGCTTCAACTGGGTACCCATTTGGAATCGCTGTCCATTCACATGGAAACTCTGCAGTCTCACCTCATAAATTGGAATTCTCGCGCTCTAATTTCCCTCTCCCGGCTGAATTTTCAAGAATCAATCCGCAGTCCGGCTCTGTTTTCCATGTGACTTCCAAGTCATCAGTTTGTAAAATCCATAGTTTGCCTGACATTGATAATATCTTCTGGGATAGAGTTCCAACGCCGATACTTGATGTGATTGAAAATCCTATCCATTTGAAGAATTTGTCTCTTAAGGAATTGAAACAATTAGCTGAGGAAATTCGTTCGGAGTTGTCTTCCTTTCTTCCAAACATACCGAAATCTTATAAGGCCAGTTTGGCAGTTGTGGAGCTGACTGTTGCCTTACACCATGTTTTCCATGCTCCAGTGGATAAGATACTGTGGGATGCAGGAGAAGAGACCTATGCACACAAGATTCTTACCGGAAGGCGACCTCTCATGAGTACATTGCATAAAAAGAATGGTCTTTCTGGGTCCACATCTCGGTTGGAAAGTGAATTTGATCCATTTGGTGCTGCACATGGCTGCAATAGTGTATCTGCTGGACTTGGCATGGCAGTAGCAAGGGATATAAAAGGTAAGCGTGAAAGAATAGTTACGATAATTAACAATGGGTCAACTATGGCGGGGCAAATATATGAAGCAATGAGTAATGTGGGATATTTGGACTCAAATATGATAGTGATCTTAAATGACAGTCGGCATTCTTTACACCCAAAACTTGATGAGGGCTCTAAGACATCTGTCAGTGCTTTGTCTAGCACCATCAGCAGGCTTCAGTCCAGCAAATCCTTTCGAAAGTTTCGTGAAGCAGCTAAGGGCGTAACTAAAAGAATTGGTAAGGGAATGCATGAATTGGCTGCCAAGGTTGACCAATATGCTCGTGGCATGATGGGTCCCCCGGGATCAACCCTTTTTGAAGAGCTTGGACTCTATTATATAGGCCCTGTTGATGGCCACAATATGGAGGACCTCATTTGTGTTTTACAAGAAGTTGCATCACTCGATTCGATGGGTCCAGTACTGGTACATGTCATAACTGAAGAAAACTATGCAGTAGAAGGTTATCAGAGGGGTGCAGGCAGGCAACTGGATGGTTTTTATAACATAGATCCATTGCTGTACGGAATTGATTCTCGAACATATAGTGATTGCTTTGTGGAGGCTTTAATTGTGGAGGCAGAAAAGGACAAAAACATTGTGACGGTGCATGCTGGGATGCAGATGGAACCATCAATTCAACTGTTTAGGGAAAGATTTCCCGATAAGTTCTTTGATGTGGGTATGGCTGAGCAACACGCAGTTACATTTGCTGCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGTGTAATTCCTTCGGCTTTCTTACAGAAGGCATACGATCAGGTGGTACATGATGTAGATCAACAAAGAATACCTGTACGTTTTGTAATTACCAGTGCTGGATTGGTAGGATCTGATGGTCCTATGCAATGTGGTGCATTTGATATAACATATATGTCGTGCTTGCCAAACATGATTGTCATGGCACCATCAGATGAGAATGAGCTAGTACACATGGTGGCCACGGCAGCGTGCATCGATGATCAACCAGTGTGCTTTCGATATCCAAGAGGCTCCATTGTCACCACTAACAACCTTGCCCTTGAAGGGGTTCCGATTGAAATTGGAAAAGGGAGGGTTCTTGCTGAGGGAAAGGATGTTGCTTTGCTTGGGTATGGGGCAATGGTTCAGAACTGCCTTAATGCTCGGGCCCTTCTCTCAAAGTTCGGTGTCGAGGTTACAGTTGCTGATGCAAGGTTCTGCAAGCCGCTCGACATAGCACTTCTTCGACAACTCTGTGATAACCATGCATTTCTAATCACAGTTGAGGAAGGTTCAATTGGAGGCTTTGGATCTCATGTTGCACAATTCATCGCCCTCGATGGACGGCTAGATGGAAGAGTCAAGTGGCGACCGATAGTTCTACCAGATAATTACATAGAGCAAGCATCACCACAAGAACAGCTCTCCCTCGCCGGGTTGACTGGAAATCACATCGCTGCAACGGCATTAAGCCTGCTTGGCCGCCCCCGTGAAGCATTACTCATGATGTGTTAG 2262 44.83 MGSPVQSMIMFWPFSTGRPAIVESTRETILHHNSFMGTASTGYPFGIAVHSHGNSAVSPHKLEFSRSNFPLPAEFSRINPQSGSVFHVTSKSSVCKIHSLPDIDNIFWDRVPTPILDVIENPIHLKNLSLKELKQLAEEIRSELSSFLPNIPKSYKASLAVVELTVALHHVFHAPVDKILWDAGEETYAHKILTGRRPLMSTLHKKNGLSGSTSRLESEFDPFGAAHGCNSVSAGLGMAVARDIKGKRERIVTIINNGSTMAGQIYEAMSNVGYLDSNMIVILNDSRHSLHPKLDEGSKTSVSALSSTISRLQSSKSFRKFREAAKGVTKRIGKGMHELAAKVDQYARGMMGPPGSTLFEELGLYYIGPVDGHNMEDLICVLQEVASLDSMGPVLVHVITEENYAVEGYQRGAGRQLDGFYNIDPLLYGIDSRTYSDCFVEALIVEAEKDKNIVTVHAGMQMEPSIQLFRERFPDKFFDVGMAEQHAVTFAAGLSCGGLKPFCVIPSAFLQKAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPMQCGAFDITYMSCLPNMIVMAPSDENELVHMVATAACIDDQPVCFRYPRGSIVTTNNLALEGVPIEIGKGRVLAEGKDVALLGYGAMVQNCLNARALLSKFGVEVTVADARFCKPLDIALLRQLCDNHAFLITVEEGSIGGFGSHVAQFIALDGRLDGRVKWRPIVLPDNYIEQASPQEQLSLAGLTGNHIAATALSLLGRPREALLMMC 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24633535 24638379 + ClG42_08g0146200.10 Clacu08g1462 255804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1462 753 Pfam Transketolase, pyrimidine binding domain 434 594 IPR005475 -
Clacu08g1462 753 Gene3D - 108 407 - -
Clacu08g1462 753 CDD TPP_DXS 157 401 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Clacu08g1462 753 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 115 743 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Clacu08g1462 753 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 90 750 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)|GO:0016744(PANTHER)
Clacu08g1462 753 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 113 494 IPR029061 -
Clacu08g1462 753 SMART Transket_pyr_3 433 598 IPR005475 -
Clacu08g1462 753 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 432 600 - -
Clacu08g1462 753 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 118 740 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Clacu08g1462 753 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 433 621 IPR029061 -
Clacu08g1462 753 Gene3D - 433 606 - -
Clacu08g1462 753 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 611 743 - -
Clacu08g1462 753 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 116 400 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Clacu08g1462 753 Gene3D - 611 742 IPR009014 GO:0003824(InterPro)
Clacu08g1462 753 Pfam Transketolase, C-terminal domain 611 734 IPR033248 -
Clacu08g1462 753 CDD TPP_PYR_DXS_TK_like 439 592 - -
Clacu08g1462 753 SUPERFAMILY TK C-terminal domain-like 606 742 IPR009014 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1462 K01662 - - csv:101220427 1358.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1462 Clacu-Chr8:24633535 Clacu10g0774 Clacu-Chr10:11929176 9.20E-204 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g434 . . . . . . . . . Cmo12g00271 . . . Car12g00300 Sed03g1587 Cpe07g00279 . Bhi04g01008 Tan02g2694 Cmetu03g0115 . Hepe10g0276 . Lcy13g1755 . . . . . . . Cone4ag1813 Cone7ag1723 . . . . . Cme03g01650 Blo17g00027 . . Bda13g01272 Bpe14g00571 . . Bma02g00033 . . . . Cma12g00319 . . . . . . . . . . . Cla08g01305 Cam08g1766 Cec08g1347 Cco08g1468 Clacu08g1462 . Cre08g1249 Lsi08g01169 . Chy03g01151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010569 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 31