Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1463 ATGAGCAACATTATTGTCCCTTTACCTTCCAACCTTCTCCCAGACGCAGCAAATCCAGAATGGATGAGCAAAGGCGACAACGCATGGCAGTTAACGGCGGCGACACTAGTGGGACTACAGAGCGTGCCGGGTCTAATAATCCTGTACGGCGGAGCAGTTAAGAAGAAATGGGCCATAAACTCAGCGTTCATGGCTCTGTACGCGTTCGCTTGCGTGTTGGTTTGTTGGGTGGGGTGGGGCTACCGGCTGTCGTTTGGGGATAAATTGGCGCCGTTTTGGGGGAAATTGAATGTGGCTTTGGACCAGGAGTTTCTGCTGGCGCCAGCCTTTGCTGGGAAGTTTCCTTCGGCCACAATGGTTTTCTTTCAATTTGTATTTGCGGCCATTACTTTGGTTTTGATCGCTGGGGCTTTACTTGGACGTATGAACTTTTATGCTTGGATGTTGTTTGTGCCGCTTTGGTTAACGTTTTCGTATACGTTTGTGGCCTTTAGTATTTGGAGTCCTAATGGCTTTTTCTTTAAAATGGGACTTATTGATTACTCTGGTGGTTACGTCATTCATTTGTCTTCTGGTGTTGCTGGCTTCACCGCTGCTTATTGGGTTGGGCCACGGCTGTCGAAGGACAGAGAAAGCTTCCCTCCGAACAACATTCTTCTGATGCTGGCCGGAGCAGGGTTGCTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCATACGCCGCCAACATCGACGCCTCACTGGCGGCTCTTAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCGTTTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCGATTATAATGGGAGTGCTATCAGGTTCAATCCCATGGTTCACAATGATGGTAGTTCACAAGAAATCCGCCATTCTCCAAAAGGTAGACGACACAATGGCCGTTCTCCACACCCACGCCATCGCCGGCAGCCTCGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTTCTACGGCGCCTACAACAAATACATTGGCCTTTTCTACGGCTTCAACACAAAACAAGTTAAACTCGGCTTTCGCCAACTCGGCGTTCAACTCCTCGGAATCATCTTCGTCACTCTCATAAACGTCATTGTCACTAGCCTTATCTGTGTCCTCCTCCAATATATCGTCCCGCTACGAATGTCCGAGGAGGACATGGCTATCGGCGACGAGGCCGCCCATGGCGAAGAGGCCTACGCCATTTGGGGCCAGGGCGAGAAGATGGATTCTTCTAAATACGATATTGAGATTCCTGTGTCAACCAAACATAGGCATTCAGGCCAGATTGAAATGGCCTAA 1428 51.61 MSNIIVPLPSNLLPDAANPEWMSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLAPFWGKLNVALDQEFLLAPAFAGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAALNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPRLNFVFYGAYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLINVIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEIPVSTKHRHSGQIEMA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24642028 24645663 + ClG42_08g0146300.10 Clacu08g1463 255805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1463 475 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu08g1463 475 PANTHER AMMONIUM TRANSPORTER MEP2 17 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Clacu08g1463 475 FunFam Ammonium transporter 11 445 - -
Clacu08g1463 475 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu08g1463 475 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Clacu08g1463 475 NCBIfam ammonium transporter 26 442 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Clacu08g1463 475 SUPERFAMILY Ammonium transporter 21 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2132 Clacu-Chr1:32948300 Clacu08g1463 Clacu-Chr8:24642028 5.40E-162 dispersed
Clacu08g1463 Clacu-Chr8:24642028 Clacu10g2198 Clacu-Chr10:35061764 1.10E-151 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1463 K03320 - csv:101210590 904.434