Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1464 ATGTACGAGTTCCAGGTCCCACATTTAGCAATCCTGGTTCCGGTCTTCACTAAACCCCGAGCCAAGCGCTGGAAGATCTGTCCTCCACCGCACCCTCTCTCTCACGAGAGGAAACGGAACCCTTTATCATCTCTCTGCCATATTCATCGGCCTCGAGTGATGGGGGCTCCGTTCGAGGGAATAGTAAAGGATTTGAAGGGAAGGGCGGCGTGCTATAAACAGGATTGGATAAGTGCACTATGTTCTGGCGTCAGGATTTTGGCTCCTACTATGTACATTTTCTTCGCCTCAGCTCTACCTGTTATTGCCTTTGGGGAGCAACTTAGTAGGGATACAGGTGGAAGATTGAGCACCGTGGAAACATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATCTTTGGGGGACAGCCTTTGTTGATTTTAGGAGTGGCAGAACCAACTGTTATAATGTACATTTACTTGTACAGTTTCTCCCAAGGCCGGCCAGAGTTAGGAGGCGATCTCTTTTTAGCTTGGGCTGGATGGGTGTGCATTTGGACAGGATTCTTCCTGATCCTCCTTGCAATCTTTAATGCTTGCACCGTCATCACCAAATTTACCAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATAAGCGAATTCCAGATTCCCAAGTCAGAAAAGCCAGAGGTATTGGAGTACCAATTTGAGTGGTTGTATGCAAATGGGTTGCTTGCGGTAATTTTTTCAATGGGTCTACTCTTCACAGCCTTGAAAAGCAGACATGCAAGATCGTGGAAATATGGAACTGGCTGGTTCCGGAGTTTCATTGCGGACTATGGGGTTCCACTTATGGTTGTGTTCTGGACAGCATTGTCGTATGGAGTTCCCGGTGAAGTTCCAAATGGAGTTCCAAGGAGACTCTTTTGCCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGACTGTAGTGAAGGACATGGGTAAGGTTCCATTGACTTACATCTTTGCTGCAACTCTGCCAGCCGTCATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCGCAAATGGCGCAACAGAAAGAGTTTAATCTTCAAAATCCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTGTGATTTGTGGATTGCTTGGATTGCCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTTGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAAGGAATGTATCAAACAAAAAGCAAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACGCATCTCCAACTCCTAAAGAGCTAGAAACCTTGACGAAGGCAGTAATGAATGCTGATGAAGGTGATCGAAAGGGAAAATTCGATGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTGCTGCAGTCTTTCCTTGTTGCTGTATTAATATTTGCTATCCCTATAATGAGAATGATACCTACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCTGTTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTGTTACTCTTCATTACACCCGGTCGGCGTTTCAAAGTCTTGGAGGGGTCTCATTTATCTTTCGTTGAATCTGTGCCATTCAAGATCATTGCTACGTTTACCCTCCTCCAGTTTGCATATTTCCTGTTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTAGATGCTTCAGAGTATGAGGAGATTGCTGGTGCCGGACATCGCGCCATTAATCTCACAGCACCAGAAAAGGAGCCACCTGATTCAATTGCGGAAGAGAGTAACGAAGAATACTATGATGCCGAGATATTAGATGAGATGACAACTCATAGAGGAGAATTAAAGCTTAGAACTTCAAACCAATACACCCATCCGACCGAAGGGTCGCCGCCGAGAGCGACGGCGTGGCCGGAGTACTTCAGGTCCGCCGCCGCCATCTCCGAGAGCAAGTTGAATCTGGGAATTGACAGTGCATGCGAAAAATAA 2214 45.66 MYEFQVPHLAILVPVFTKPRAKRWKICPPPHPLSHERKRNPLSSLCHIHRPRVMGAPFEGIVKDLKGRAACYKQDWISALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGRLSTVETLASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYSFSQGRPELGGDLFLAWAGWVCIWTGFFLILLAIFNACTVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFQIPKSEKPEVLEYQFEWLYANGLLAVIFSMGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVFWTALSYGVPGEVPNGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAATLPAVMIAGLYFFDHSVASQMAQQKEFNLQNPSAYHYDVFLLGIMTVICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDASPTPKELETLTKAVMNADEGDRKGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVAVLIFAIPIMRMIPTSVLWGYFAYMAVDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVESVPFKIIATFTLLQFAYFLLCFGVTWIPVAGILFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGAGHRAINLTAPEKEPPDSIAEESNEEYYDAEILDEMTTHRGELKLRTSNQYTHPTEGSPPRATAWPEYFRSAAAISESKLNLGIDSACEK 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24652074 24661028 + ClG42_08g0146400.10 Clacu08g1464 255806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1464 737 MobiDBLite consensus disorder prediction 690 704 - -
Clacu08g1464 737 Gene3D Helical hairpin bin 68 110 - -
Clacu08g1464 737 FunFam probable boron transporter 2 68 110 - -
Clacu08g1464 737 MobiDBLite consensus disorder prediction 690 710 - -
Clacu08g1464 737 Pfam HCO3- transporter integral membrane domain 250 424 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu08g1464 737 Pfam HCO3- transporter integral membrane domain 498 640 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu08g1464 737 Pfam HCO3- transporter integral membrane domain 57 235 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu08g1464 737 PANTHER ANION EXCHANGE PROTEIN 28 687 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0519 Clacu-Chr1:5091489 Clacu08g1464 Clacu-Chr8:24652074 3.30E-261 dispersed
Clacu04g0292 Clacu-Chr4:9599832 Clacu08g1464 Clacu-Chr8:24652074 3.70E-07 dispersed
Clacu08g1464 Clacu-Chr8:24652074 Clacu10g1172 Clacu-Chr10:24365206 1.00E-215 dispersed
Clacu07g1288 Clacu-Chr7:27678743 Clacu08g1464 Clacu-Chr8:24652074 2.50E-269 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1464 K24194 - csv:101220188 1213.75