Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1468 ATGACAAAGAAGAAGAACCCTTTGGTTTTTCTGGATGTCTCAATTGATGGAGACCCCAGGGAAAGAATGGTTTTTGAGCTGTTTTATGACGTTGCTCCAAAAACGGCCGAGAATTTTCGTGCACTGTGTACAGGAGAGAAAGGAATTGGCCCCAAAACTGGAAGACCACTACATTATAAGGGGTCCTTTTTTCATCGGATTATTGGAGGTTCTATGGCACAGGGTGGAGATTTTGTCAAGCGAGATGGTACTGTTGGAGAGAGCATATACGGTGGGAAGTTTCCAGATGAACTTCCTCGACTAAGACATGATGGACCTGGCCTTCTATCAATGGCAATTGCTGACCGTGACACTCTAGGCTCCCATTTTCTTATCACATTTAAGGCTAATAATCATCTCGACAGGAAGCATGTAGTATTTGGAAAGCTTGTCCAAGGTTTTGACGTACTGAAAAAGATAGAAAGAGTGGATGTAGAAGATGGCGTTCCAACTGTTACAGTGAAAATTGTTAATTGTGGCGAGTTTAATGAAGAAAAAAGAAAGATGAATAGAGTTAAAACAGGAAAAAATGCTTCAGATGATGATAGTCATGAAGAAAAGCGAAGAGGAAAGCAGAAAAAATCAAGGGAAAGGAAGAGGAGGAAGAAAAAATACGACACGTCCGATTCAGATAGTTCTTCTGATTCAGACTTAGACTCTGACTCTGAGAGTGTTTCTGACACAGATTTGTCGTCGTCATCATCTTCTTCTGAAAGTTCTTCCAGTGATGACAGGTCTAGAAAGAGAAAGAGGACTTCTAAGAGAGGCAGATATAGGCGTGGGAGAAAAAAGGATAAGAGACGTGAACGAAAGAGACGGAGGCACGATAAGAAGTCAAAGAGAAAATCTAAAAGGGACTTGGACAGTCTTACGGATACTGAAAGTGATAGCAAGAGCAGAAGCACGTCTGAGCAAGATGGCCTTGATGTTCAAGGAAAAGATCTAAACCGTAAAGGCTTGTCAGTGAAATCTGCTGAAGATGCACCTCAAGCCTCAGATGCCCGCCACAGAAGGAGAGAGGCAGATATGGTGGAAAATGATGGGGAGAGATCCCCTAAGGAGAATGGTGAGCGAAGGAGCAATGGCATTGCTGCTGTGGAATCTAAATCTGACAGAAGCTTGGAAAGACAACCTGATATTGTAGATGACCACCCTGGAAAATCTAGGAGTCGAAGCATTAGTCCTAGAAGGACGATGAGTAAGAGTATGAGTATTAGTCCCCGAAAGAGTCACAGCAAGAGCCGTAGTGTTAGTCCAAAACGAAGTATGAGCAGGAGTCGAAGTGTTAGTGGAAGCCCGCCTCGAGCACCATTGAGGAGCAGGAGCATCAGCAGAAGTCCTGTTCGAAATGGTAGCAGGAGCGTCAGCAGAAGTCCTGTTAGAAATGGTAGCCGAAGCCCAGGTAGAAGTATTAGCAGGAGCCCAGGTAGGGGAAGGAAAGGTAGGAGTATTAGTAGAAGTCCAGTACGAAGCGGGCCTCAGAGAGGTATTAGCAGAAGCCCCGTGAGATCCAATCCACAGAGAAGTCCAAGCAGGAGCCCACCTAGAAGAGCCTCTAGAAAATCAATTAGTAGGAGTCCTGCAAGAGTTTCCAGAAGCGTAAGCAGAAGTCCAGTGAGGTCCTCTCGTCAGAGTTTGAGCAGGAGCTCAGGTAGGGCACCTTCTAGGAGGAGTATCAGTCGAAGTCCTCGGGCACCAGCTAGGAATCGAAGGAGCTACTCTAGGAGTCTTACTCCTGTCCGAAGGCCAAGGTCACCGGCTTCTGATAGAGGGAGAAGTGCATCAAGAAGTGTTTCTCCAGAAGGTTCTCCTAAGCGCATCAGAAGGGGGCGTGGTTTTAGTGAGCGTTATTCATTTGCTCGAAGATACAGAACACCCTCTGCATCTCCTGTCAGGTCATACCGTTACAGTGGAAGAGTTGAACGTGACAGATATTCAAATTACAGAAGGTATTCTCCTAGGCGCTATAGAAGCCCTCCTAGAGGAAGATCTCCGCTAAGATACAGAAACAGAAGAAGCAGGACTCCTTCTGCATCCCGTAGTCCTCGTTACCGTAGTCGTCGTTATAGCCGTAGCCGAAGCCCTATTAGGAGCCGTTCCCCAGTTGAGGGATCCAGGTCTCGTTTGTCTCCTAGAGTAGTTAGGCGGAGATCTCCTTCAAGGAGCAGATCCCCATCAAAATCAAGGTCCCCTGCTGATTCACCATCCCCAAGAAGAACGAGCAGAGATAGGTCCAGGTCACCTTCTGGTAGTCCAGATGGGAAGAAGGGTCTGGTTTCTTACGGTGATGGATCTCCAGATTCAGAGAGTTTGGTGAGATATTCGATATCTTATGTTGATGATTACAATTCTAAGATTCTAGTTGCCACAATATTGTTGCTTACCTCTTCTTTTAATGGTGTGCTACCTGAAGGAGATTCAGTTGGTGGTGTTCACCAGTTTCAAATATCCTGCATTTAG 2499 45.82 MTKKKNPLVFLDVSIDGDPRERMVFELFYDVAPKTAENFRALCTGEKGIGPKTGRPLHYKGSFFHRIIGGSMAQGGDFVKRDGTVGESIYGGKFPDELPRLRHDGPGLLSMAIADRDTLGSHFLITFKANNHLDRKHVVFGKLVQGFDVLKKIERVDVEDGVPTVTVKIVNCGEFNEEKRKMNRVKTGKNASDDDSHEEKRRGKQKKSRERKRRKKKYDTSDSDSSSDSDLDSDSESVSDTDLSSSSSSSESSSSDDRSRKRKRTSKRGRYRRGRKKDKRRERKRRRHDKKSKRKSKRDLDSLTDTESDSKSRSTSEQDGLDVQGKDLNRKGLSVKSAEDAPQASDARHRRREADMVENDGERSPKENGERRSNGIAAVESKSDRSLERQPDIVDDHPGKSRSRSISPRRTMSKSMSISPRKSHSKSRSVSPKRSMSRSRSVSGSPPRAPLRSRSISRSPVRNGSRSVSRSPVRNGSRSPGRSISRSPGRGRKGRSISRSPVRSGPQRGISRSPVRSNPQRSPSRSPPRRASRKSISRSPARVSRSVSRSPVRSSRQSLSRSSGRAPSRRSISRSPRAPARNRRSYSRSLTPVRRPRSPASDRGRSASRSVSPEGSPKRIRRGRGFSERYSFARRYRTPSASPVRSYRYSGRVERDRYSNYRRYSPRRYRSPPRGRSPLRYRNRRSRTPSASRSPRYRSRRYSRSRSPIRSRSPVEGSRSRLSPRVVRRRSPSRSRSPSKSRSPADSPSPRRTSRDRSRSPSGSPDGKKGLVSYGDGSPDSESLVRYSISYVDDYNSKILVATILLLTSSFNGVLPEGDSVGGVHQFQISCI 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24704627 24712316 + ClG42_08g0146800.10 Clacu08g1468 255810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1468 832 MobiDBLite consensus disorder prediction 238 253 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 537 570 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 578 594 - -
Clacu08g1468 832 Gene3D - 1 176 IPR029000 -
Clacu08g1468 832 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 615 631 - -
Clacu08g1468 832 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Clacu08g1468 832 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Clacu08g1468 832 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Clacu08g1468 832 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Clacu08g1468 832 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Clacu08g1468 832 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Clacu08g1468 832 MobiDBLite consensus disorder prediction 180 203 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 667 691 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 342 370 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 434 484 - -
Clacu08g1468 832 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 175 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 261 294 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 500 526 - -
Clacu08g1468 832 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 749 763 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 295 316 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 405 425 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 382 403 - -
Clacu08g1468 832 MobiDBLite consensus disorder prediction 180 780 - -
Clacu08g1468 832 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Clacu08g1468 832 MobiDBLite consensus disorder prediction 649 663 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1468 K09566 - - csv:101210345 465.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1468 Clacu-Chr8:24704627 Clacu09g0738 Clacu-Chr9:6511025 6.30E-12 dispersed
Clacu08g1468 Clacu-Chr8:24704627 Clacu02g0610 Clacu-Chr2:6008250 1.20E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105