Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1470 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGGATCCATGTAGTAACTATCAGGATTGCTTGGATTTTAGGCCTCAATCTTTTCATGAATGCAATAACAAAGAAACATTTGGGGGAGCTTTTCAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAATAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTTTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTAGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTAATGACCATAATGCGACAGCATTAAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGCATCTCTTCAGAAAGATTAG 1821 42.06 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKDPCSNYQDCLDFRPQSFHECNNKETFGGAFQPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKATSYDPEFSVLNLDAASNNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEITCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESLHIVLERRHQIESRDPFAFAPRVIEDRNELPENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLINDHNATALSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDIFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSSILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYASLQKD 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24725163 24731081 - ClG42_08g0147000.10 Clacu08g1470 255812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1470 606 ProSiteProfiles CRC domain profile. 321 444 IPR005172 -
Clacu08g1470 606 MobiDBLite consensus disorder prediction 286 300 - -
Clacu08g1470 606 SMART CXC_2 404 445 IPR033467 -
Clacu08g1470 606 SMART CXC_2 320 361 IPR033467 -
Clacu08g1470 606 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 406 442 IPR005172 -
Clacu08g1470 606 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 323 358 IPR005172 -
Clacu08g1470 606 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 139 598 IPR044522 GO:0003700(InterPro)
Clacu08g1470 606 MobiDBLite consensus disorder prediction 286 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1470 K21776 - - cit:102611790 259.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0625 Clacu-Chr6:7156166 Clacu08g1470 Clacu-Chr8:24725163 1.50E-42 dispersed
Clacu06g0939 Clacu-Chr6:12591266 Clacu08g1470 Clacu-Chr8:24725163 7.30E-27 dispersed
Clacu08g1470 Clacu-Chr8:24725163 Clacu11g0377 Clacu-Chr11:3446831 1.50E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g315 . . . . . . . Bma01g02162 . . . Cma05g00464 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 . . . .
Vvi4g451 . . . . . . . . . . . Cma05g00400 . . . . . . . . . . . . . . . . . . . . . Cone17ag1032 Cone20ag0663 . . . . . . . . . . . . . . . . . . Car05g00334 . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 Lsi08g01178 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1470 . 325 447 CPP Transcription Factor Family AT3G22780 57.6 3.3e-38 157.1
Clacu08g1470 . 297 447 CPP Transcription Factor Family AT4G14770 52.3 1.9e-40 164.5
Clacu11g0377 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 5.5e-142 501.5
Clacu06g0939 . 589 1103 CPP Transcription Factor Family AT2G20110 50.7 8.6e-127 451.1
Clacu08g1470 . 325 456 CPP Transcription Factor Family AT3G04850 51.5 1.3e-36 151.8
Clacu11g0377 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Clacu06g0939 . 579 1102 CPP Transcription Factor Family AT4G29000 53.3 2.9e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48200 PF03638 TCR 1.30E-10 No_clan Clacu TF