Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1470 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGGATCCATGTAGTAACTATCAGGATTGCTTGGATTTTAGGCCTCAATCTTTTCATGAATGCAATAACAAAGAAACATTTGGGGGAGCTTTTCAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAATAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTTTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTAGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTAATGACCATAATGCGACAGCATTAAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGCATCTCTTCAGAAAGATTAG 1821 42.06 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKDPCSNYQDCLDFRPQSFHECNNKETFGGAFQPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKATSYDPEFSVLNLDAASNNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEITCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESLHIVLERRHQIESRDPFAFAPRVIEDRNELPENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLINDHNATALSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDIFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSSILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYASLQKD 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24725163 24731081 - ClG42_08g0147000.10 Clacu08g1470 255812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1470 606 ProSiteProfiles CRC domain profile. 321 444 IPR005172 -
Clacu08g1470 606 MobiDBLite consensus disorder prediction 286 300 - -
Clacu08g1470 606 SMART CXC_2 404 445 IPR033467 -
Clacu08g1470 606 SMART CXC_2 320 361 IPR033467 -
Clacu08g1470 606 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 406 442 IPR005172 -
Clacu08g1470 606 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 323 358 IPR005172 -
Clacu08g1470 606 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 139 598 IPR044522 GO:0003700(InterPro)
Clacu08g1470 606 MobiDBLite consensus disorder prediction 286 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0625 Clacu-Chr6:7156166 Clacu08g1470 Clacu-Chr8:24725163 1.50E-42 dispersed
Clacu06g0939 Clacu-Chr6:12591266 Clacu08g1470 Clacu-Chr8:24725163 7.30E-27 dispersed
Clacu08g1470 Clacu-Chr8:24725163 Clacu11g0377 Clacu-Chr11:3446831 1.50E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48200 PF03638 TCR 1.30E-10 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1470 K21776 - cit:102611790 259.996