Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1486 ATGGGAGAAACAAGGGACAACGAATACGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACAGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCACGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCCGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATCGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATCGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTCGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTTAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACGTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACATTGTTTCTTGTCAGTCAGTTGCAGTTGATTTTGAATGTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCGGCTACCCAGCCTCTGTAATTCGGGAGCTGGGATTGGGATTGGAAGCATCGAAGAAAAGGAGAAAGAAGAGGAAGAGAGAGAGTTTGGTGGAGAAGATGAAGATGAAGAAGAAAGAGAGGATGGGAGGGGAAAGATAGAGTAA 1491 43.46 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYIVSCQSVAVDFECAIIDVEIFSIEYRLPSLCNSGAGIGIGSIEEKEKEEEEREFGGEDEDEEEREDGRGKIE 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24838638 24844841 - ClG42_08g0148600.10 Clacu08g1486 255828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1486 496 SMART helicmild6 302 383 IPR001650 -
Clacu08g1486 496 Gene3D - 42 258 IPR027417 -
Clacu08g1486 496 MobiDBLite consensus disorder prediction 1 29 - -
Clacu08g1486 496 CDD DEADc_DDX39 45 252 - -
Clacu08g1486 496 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Clacu08g1486 496 SMART ultradead3 65 266 IPR014001 -
Clacu08g1486 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Clacu08g1486 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Clacu08g1486 496 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Clacu08g1486 496 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
Clacu08g1486 496 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Clacu08g1486 496 CDD SF2_C_DEAD 263 392 - -
Clacu08g1486 496 MobiDBLite consensus disorder prediction 474 489 - -
Clacu08g1486 496 MobiDBLite consensus disorder prediction 1 22 - -
Clacu08g1486 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
Clacu08g1486 496 MobiDBLite consensus disorder prediction 464 496 - -
Clacu08g1486 496 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Clacu08g1486 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Clacu08g1486 496 Gene3D - 259 427 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1486 Clacu-Chr8:24838638 Clacu09g0083 Clacu-Chr9:765115 2.30E-62 dispersed
Clacu08g1486 Clacu-Chr8:24838638 Clacu07g1389 Clacu-Chr7:28715675 4.70E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1486 K12812 - csv:101217346 832.402