Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1488 ATGGAGATTGTTGGATCTCAAATGTATGCAACAGTTGATCTTGATAAGGCCAGAGTTGGGCGGACGAGGATAGTAGATCAGCCATACGCTCCTGAATGGAACGATCATTTTCGTATATATTGTGCTCATACAGTGTCACATATTATATTCACAGTTAAAGATGGAGGTGTAATCGGTGCAACATTGATTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATTTGTATATGAGAAATGGGTTGAAATATTAGATGAAGACGGTAAGCCTTTATATGGTCGTTCTAGAATCCATGTGAAGTTACAATTTTCAAGTGTTAATGAAGACAGGAACTGGTCCCGAGGAATTCCAGATCCTTTCGGTGGTGTACCTTTCACATTCTTCAACCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAGGATGCTCATGTTTTAAACAACTTCCTTCCTCGAGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACATAGGTGTTGGGAGGACATATTTGATGCAATTAGCAATGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATAAGAGACCGAGAAAGAAGACAGACAGGAGAGGATATTACTCTGGGGCAACTGCTAAAGAAGAAGGCAGACGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCTACTGAAGAGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAAGGGCTCGAAGGTACATTGCGTTCTGTGTCCACGGAATCCTGACGTTGGTAGAAGTATCATTCAGGGGTTTGAGACTGCTACAATGTTTACTCATCACCAAAAAACAGTTGTGCTTGATAGTGAAATAGCTGGTGGAGGAACAGAGAAAAGAAGGATCGTGAGTTTTGTTGGTGGTATTGATCTGTGTGATGGGAGATATGATACACCGAAGCACCCTTTGTTTTCAACTCTAGATTCAATCCACTATACCGATTTTCACCAGCCTAACTTTTCAGGCTCTTCAATTAGGAAAGGCGGTCCTCGGGAACCATGGCATGACATCCATTGCTGCCTAGAAGGACCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGCGAAAGCAAGTTGGAAACAACTTGTTGATTCCAATGCAAAAGCTTGAAGAAACCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACATGGAATGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTAGCTCGCTTTCCAGAGATACCTGAGGATGCATCCAAAGTAGGCCTTGTAAGTGGGAAGAATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAATTTCATATACATTGAGAATCAATATTTCCTTGGAAGCTCTTATGGTTGGAAATCAAATGGTATAAGGGTAGAAGAAATCAATGCTTTGCATCTTATTCCAAAGGAGATCTCACTGAAGATTGTGAGCAAGATCGAAGCTGGAGAGAGATTTACAGCATATATTGTGATTCCAATGTGGCCAGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTGGACATGATGTACACAGATATAGCTCAAGCCCTTCGGAAGAAGGGTCTCGATGAAAATCCTAAAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATGTACCACCGGAGAAGCCAGAACCCAATTCGGATTATGCTCGGGCTCAAGAGCACCGACGTTTTATGATCTATGTTCATTCAAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCCAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTTCAACCTCATCACTTGGCATCTGGTGAGCCTGCAAGAGGTCAAATCTACGGCTTCAGAGTTGCTCTATGGTACGAGCATCTCGGTCTGTTTGACAAAGTCTTCCATAACCCAGAGACTGAAGACTGCATCCAATTCGTAAACAAGCTCGCTCTAGAGAACTGGCAATTTTACTCAGACGATACCTTTGATGGCGATCTTCCTGGCCATCTCCTTTCCTATCCCATTGAAGTAGGTCCCAACGGATCGGTTACGGCGCTGCCAAAGTTTGAATTTTTTCCTGACACCAAGGCTCGTGTTCTTGGGCAACTAGCCGAGTATCTACCTCCAATCCTCACCACTTGA 2298 42.3 MEIVGSQMYATVDLDKARVGRTRIVDQPYAPEWNDHFRIYCAHTVSHIIFTVKDGGVIGATLIGRAYVPVEDIIKGFVYEKWVEILDEDGKPLYGRSRIHVKLQFSSVNEDRNWSRGIPDPFGGVPFTFFNQRWGCKVSLYQDAHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGEDITLGQLLKKKADEGVTVLLLVWDDRTSTEEFKRDGLMATHDQETAEYFKGSKVHCVLCPRNPDVGRSIIQGFETATMFTHHQKTVVLDSEIAGGGTEKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYTDFHQPNFSGSSIRKGGPREPWHDIHCCLEGPVAWDILYNFEQRWRKQVGNNLLIPMQKLEETITRPVMVLPADDPDTWNVQIFRSIDGGAVARFPEIPEDASKVGLVSGKNNVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSNGIRVEEINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDENPKDYLTFFCLGNREKKRTGEYVPPEKPEPNSDYARAQEHRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASGEPARGQIYGFRVALWYEHLGLFDKVFHNPETEDCIQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSVTALPKFEFFPDTKARVLGQLAEYLPPILTT 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24856431 24858848 + ClG42_08g0148800.10 Clacu08g1488 255830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1488 765 Pfam Phospholipase D C terminal 683 754 IPR024632 -
Clacu08g1488 765 SUPERFAMILY Phospholipase D/nuclease 122 399 - -
Clacu08g1488 765 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 638 IPR001736 GO:0003824(InterPro)
Clacu08g1488 765 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 108 IPR035892 -
Clacu08g1488 765 ProSiteProfiles C2 domain profile. 1 83 IPR000008 -
Clacu08g1488 765 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 283 321 IPR001736 GO:0003824(InterPro)
Clacu08g1488 765 FunFam Phospholipase D 424 657 - -
Clacu08g1488 765 FunFam Phospholipase D delta 158 402 - -
Clacu08g1488 765 CDD C2_plant_PLD 2 105 - -
Clacu08g1488 765 Gene3D Endonuclease Chain A 159 407 - -
Clacu08g1488 765 SUPERFAMILY Phospholipase D/nuclease 439 693 - -
Clacu08g1488 765 Pfam Phospholipase D Active site motif 613 638 IPR001736 GO:0003824(InterPro)
Clacu08g1488 765 Pfam Phospholipase D Active site motif 284 321 IPR001736 GO:0003824(InterPro)
Clacu08g1488 765 SMART pld_4 611 638 IPR001736 GO:0003824(InterPro)
Clacu08g1488 765 SMART pld_4 283 321 IPR001736 GO:0003824(InterPro)
Clacu08g1488 765 PANTHER PHOSPHOLIPASE D 6 752 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu08g1488 765 Pfam C2 domain 6 84 IPR000008 -
Clacu08g1488 765 PIRSF PLD_plant 1 765 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Clacu08g1488 765 Gene3D C2 domain 3 116 IPR035892 -
Clacu08g1488 765 Gene3D Endonuclease Chain A 424 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1488 Clacu-Chr8:24856431 Clacu08g1564 Clacu-Chr8:25477023 1.80E-199 dispersed
Clacu07g1268 Clacu-Chr7:27519475 Clacu08g1488 Clacu-Chr8:24856431 0.00E+00 wgd
Clacu08g1488 Clacu-Chr8:24856431 Clacu09g0279 Clacu-Chr9:2499428 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1488 K01115 - csv:101207900 1478.38