Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1490 ATGCATCTGCTCTTTTCACCTGAAAACTTGGTGATTGCCGTCTTCACCTGTATTGGGTCTCTCTTTTTTCCTCTCTTTGGAGGGTTTTTCCGTGGAGTTCTGCCCACAGTTGAATTTTTGGGTTTCGTCAACCCCTACCCATGGCTAAGATCTTTGGTTTTACTCCGATATTTTCGTAACAATACTTGCATAGTTTCATTTGACTGTGAAGTTTGTGGTGTTATTTATTGGGAGTACAGTCCCTCAAGTTGTGAACTTGGTACGATGTATCAGCTAATTTCTTTTTCTTTTGATCTTGCAGTCACAGAAAGTGAGGATTTTTTCCCTGGGGCACCAATCTATCCAAACCCCAAGGATACTAGTCCCTTTTTGTCCCTTGGTCGTCATGTGGATGTTTGTTATCCTCTCCGTAAGAGGTCCAGAGTCAGTGCCCCATTTGTGCCTAGTGGAGAAATACTCAAAAAGAAGGAGGCATCTATTGAAGTTCTTCCAGACGAGTGCCTCTTTGAGATCTTCAGATGCCTGCCTGATAGAGAGACGAGGAGCCTCTGCGCTTGCGTTTCTAAACGCTGGCTCATGCTTTTAAGCAGTATAAGTGGAAACGAATTTTACAGTGCTTCCAAAAATTTGAAGCCTAAGAATGTTGTGACTGAAAACGAGAAAGATAACCTAATTGAGAACGATGGATGTCTTTCACGAAATTTAGAAGGGAAAAAGGCAACAGATGTAAGACTAGCTGCCATAGCAGTAGGAACTGCTAGTTGTGGTGGCTTGGGCAAGTTGTCAATTCGTGGAGGCAATCATGGTTCCGAGGTTACAAACCTTGGCCTTAAGGCTGTTGCGCATGGATGTCCTTCCCTTAAAGCTATTTCTTTGTGGAATCTGTCTTCAATAGGTGATGAAGGTCTGATTGAGATTGCCAAGGGATGTCAACTCCTAGAGAAGCTTGATTTATGCCATTGCCCTGGAATCTCAAACAAAGCTTTGCTGGAACTTGCCAAAAACTGCGCTAATCTGACTGCTATAACAATAGAGTCTTGTCTAAACATTGGCAATGAAAGCATTCAATCTATTGGGCAATATTGTTCGAATCTGAAGTCCCTTTCAATCAGAGACTGCCCCCTTATCGGGGATCAAGGAATAGTTAGCATGTTCACTTCCACCTCGTACACCTTAAATAAGGTGAAGCTCCAGGGTCTAAATGTCACTGATGTGTCGCTTGCTGTCATTGGCCATTATGGAAGGGCAGTTACAGACCTTATGCTTACTGGCCTGACAAATGTTTCCGAGAGGGGATTTTGGGCCATGGGCAATGGTCATGGTTTGCAAAAGTTGAGATCATTAACACTTGCTTCTTGCCATGGTGTGACTGACGTTGGGCTACAATCAATTGGAAAGGGATGTCCAAACTTGAGGAAGTTCTGCTTGCGCAAATGTTCATTTTTGTCCGACAATGGAATGGTGTCTTTTGCTCAGGCTGCTACCTCCATTGATAACTTACAATTAGAAGAGTGCCACAGGATAACCCAATTGGGTTTATTTGGTACCATCTTAAACTGTGGTGCAAAGTTAAAGGCCCTTTCTCTAGTAAACTGCTTAGGGATCAAGGATTTGAGCCTGAACTTGCCTTCTCTGTCACCTTGCAAATCTCTGCAGTCATTATCCATCCGCAATTGCCCTGGGTTTGGTAACGTAAGTTTAACTCTTCTGAGCAAGCTGTGCCCCCAGCTTCAGCATGTGGATTTATCTGGGCTCAATGGTATTACAGATTCTGGGCTTCTGCCATTGCTTACAAATTGTAAAGCAGGATTGGTGAAGGTCAATCTAAGTGGCTGTGTGAATCTAACCGACAAAGTGATTTCATCCTTGACCAAGCTTCATGGTTGGACTCTTGAATTGCTCAATCTTGATGGTTGTTTGAAGGTCACCGATTCAAGCTTGGTGGCAATTGCAGAGAACTGTCCGTTGCTCAATGATCTCGACGTCTCCAAGTGCTGTATCACTGATTTTGGGGTTGCAGCGCTTGCTCAAGCCAACCAGTTCAACCTGCAGATCCTTTCTGTGTTTGGGTGCTCTGCCTTAACCGACCAGAGCTTGCTCGCTCTTGTAAAATTGGGCGACTCCCTCTTGGGCTTGAATCTTCAGCACTGCAACTCAATCAGCACCAGAAGTATTGAGCTGCTATTGGCTCAACTCCATCGGGAATATGGTCATTCTCTCCTTTTTCACAGATCTCCCTTGAATGGGGGTCTGTTTTTAGTGTTTTGGCTCTCACATGAGATGTCTCTCACTTTGATAGATGGCCATCCTTCCCTGAGCTCCAGTTTCTGGATCAAGGGGGTAGGGGTTTATGATCGCCTAGACAAATCATCTTCCTGGTTGCTTTTAGCAGTTCCTATATTTGGTGCCTTTCCATTCACGGGGCCTCGGTCGTGGCAGCAGGCCGGGAAGACGGTCATTTCACGTCTCAACAAGCCATTCACTTCACGTTCCATTCCCAACCACCGTCTGATTACAGATGGGGAACTCATTCACAACTGGATTGTAAGGTTTTTACCTGTGGAATCTCCCAAGCCCATCCCATAA 2586 44.78 MHLLFSPENLVIAVFTCIGSLFFPLFGGFFRGVLPTVEFLGFVNPYPWLRSLVLLRYFRNNTCIVSFDCEVCGVIYWEYSPSSCELGTMYQLISFSFDLAVTESEDFFPGAPIYPNPKDTSPFLSLGRHVDVCYPLRKRSRVSAPFVPSGEILKKKEASIEVLPDECLFEIFRCLPDRETRSLCACVSKRWLMLLSSISGNEFYSASKNLKPKNVVTENEKDNLIENDGCLSRNLEGKKATDVRLAAIAVGTASCGGLGKLSIRGGNHGSEVTNLGLKAVAHGCPSLKAISLWNLSSIGDEGLIEIAKGCQLLEKLDLCHCPGISNKALLELAKNCANLTAITIESCLNIGNESIQSIGQYCSNLKSLSIRDCPLIGDQGIVSMFTSTSYTLNKVKLQGLNVTDVSLAVIGHYGRAVTDLMLTGLTNVSERGFWAMGNGHGLQKLRSLTLASCHGVTDVGLQSIGKGCPNLRKFCLRKCSFLSDNGMVSFAQAATSIDNLQLEECHRITQLGLFGTILNCGAKLKALSLVNCLGIKDLSLNLPSLSPCKSLQSLSIRNCPGFGNVSLTLLSKLCPQLQHVDLSGLNGITDSGLLPLLTNCKAGLVKVNLSGCVNLTDKVISSLTKLHGWTLELLNLDGCLKVTDSSLVAIAENCPLLNDLDVSKCCITDFGVAALAQANQFNLQILSVFGCSALTDQSLLALVKLGDSLLGLNLQHCNSISTRSIELLLAQLHREYGHSLLFHRSPLNGGLFLVFWLSHEMSLTLIDGHPSLSSSFWIKGVGVYDRLDKSSSWLLLAVPIFGAFPFTGPRSWQQAGKTVISRLNKPFTSRSIPNHRLITDGELIHNWIVRFLPVESPKPIP 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24872265 24877328 + ClG42_08g0149000.10 Clacu08g1490 255832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1490 861 Gene3D Ribonuclease Inhibitor 543 598 IPR032675 -
Clacu08g1490 861 Gene3D Ribonuclease Inhibitor 599 661 IPR032675 -
Clacu08g1490 861 CDD F-box_AtTIR1-like 160 197 - -
Clacu08g1490 861 FunFam EIN3-binding F-box protein 1 349 539 - -
Clacu08g1490 861 PANTHER UNCHARACTERIZED 588 677 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Clacu08g1490 861 Gene3D Ribonuclease Inhibitor 662 740 IPR032675 -
Clacu08g1490 861 Gene3D Ribonuclease Inhibitor 154 386 IPR032675 -
Clacu08g1490 861 Gene3D Ribonuclease Inhibitor 387 542 IPR032675 -
Clacu08g1490 861 SUPERFAMILY RNI-like 272 512 - -
Clacu08g1490 861 FunFam EIN3-binding F-box protein 1 230 348 - -
Clacu08g1490 861 SUPERFAMILY F-box domain 157 197 IPR036047 GO:0005515(InterPro)
Clacu08g1490 861 SMART LRR_CC_2 310 335 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 654 678 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 548 573 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 362 387 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 574 599 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 680 705 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 468 493 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 284 309 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 601 626 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 628 653 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 336 361 IPR006553 -
Clacu08g1490 861 SMART LRR_CC_2 442 467 IPR006553 -
Clacu08g1490 861 FunFam EIN3-binding F-box protein 1 600 736 - -
Clacu08g1490 861 Pfam Leucine Rich repeat 443 464 IPR001611 GO:0005515(InterPro)
Clacu08g1490 861 Pfam Leucine Rich repeat 654 676 IPR001611 GO:0005515(InterPro)
Clacu08g1490 861 Pfam Leucine Rich repeat 361 383 IPR001611 GO:0005515(InterPro)
Clacu08g1490 861 SUPERFAMILY RNI-like 414 734 - -
Clacu08g1490 861 Pfam F-box-like 160 196 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1490 K14515 - - csv:101216639 1170.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1205 Clacu-Chr6:22725905 Clacu08g1490 Clacu-Chr8:24872265 2.00E-82 dispersed
Clacu11g0444 Clacu-Chr11:4181789 Clacu08g1490 Clacu-Chr8:24872265 6.30E-100 wgd
Clacu05g1843 Clacu-Chr5:27673261 Clacu08g1490 Clacu-Chr8:24872265 2.60E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28