Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1513 ATGGCTTTTCGTAACCAGCTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCGCCGACCACTCTCCGGGTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGCTGCGGATAACATCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGTGGTATCTCACCGCTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGCGATGTTATCGATGACGTCACTGATGCCGCCGATGCTATGATTGGCGCTACTGCCACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGCGGGGGGGGAGGGGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGGAGGTGCTCATGGTGGAGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCGCATCCGCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTTGACCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTATTACTTTGTTCTTTTAAAGAACAACTCCAGCAGCATGTTCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGACGAAGACCAGATAGATAGCGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGACGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCGCATTCAAAATGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATTAATCAGAGGAAGAGGAATTGGCATACAAATCCGTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGTAATGCAGGTGAAGCAACTAGCAACGACCATCCATAG 1404 49.15 MAFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLADHSPGGDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTAADNINTDFLNLHTTAPNSVVSHRSGQWLSRPILHRNQSDVIDDVTDAADAMIGATATLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNGGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVSNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKSNAGEATSNDHP 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25002143 25006212 - ClG42_08g0151300.10 Clacu08g1513 255855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1513 467 Pfam KNOX1 domain 193 233 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1513 467 SMART KNOX1_2 191 235 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1513 467 Gene3D - 380 441 - -
Clacu08g1513 467 SMART KNOX2_2 247 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1513 467 MobiDBLite consensus disorder prediction 436 457 - -
Clacu08g1513 467 MobiDBLite consensus disorder prediction 436 467 - -
Clacu08g1513 467 MobiDBLite consensus disorder prediction 147 182 - -
Clacu08g1513 467 SMART HOX_1 381 446 IPR001356 GO:0003677(InterPro)
Clacu08g1513 467 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g1513 467 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677(InterPro)
Clacu08g1513 467 MobiDBLite consensus disorder prediction 147 162 - -
Clacu08g1513 467 MobiDBLite consensus disorder prediction 11 28 - -
Clacu08g1513 467 MobiDBLite consensus disorder prediction 40 60 - -
Clacu08g1513 467 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Clacu08g1513 467 Pfam ELK domain 359 380 IPR005539 GO:0003677(InterPro)
Clacu08g1513 467 Pfam KNOX2 domain 252 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu08g1513 467 CDD homeodomain 382 443 IPR001356 GO:0003677(InterPro)
Clacu08g1513 467 MobiDBLite consensus disorder prediction 1 28 - -
Clacu08g1513 467 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 166 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu08g1513 467 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677(InterPro)
Clacu08g1513 467 SMART ELK_2 359 380 IPR005539 GO:0003677(InterPro)
Clacu08g1513 467 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0325 Clacu-Chr1:3218047 Clacu08g1513 Clacu-Chr8:25002143 3.60E-103 dispersed
Clacu08g1513 Clacu-Chr8:25002143 Clacu08g1940 Clacu-Chr8:28411673 8.60E-27 dispersed
Clacu05g1807 Clacu-Chr5:27318396 Clacu08g1513 Clacu-Chr8:25002143 5.60E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48203 PF03791 KNOX2 3.20E-19 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1513 - - - 0.0