Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1516 ATGGGTAGATTGGAAACAAAGATCGTAACCCTAAACTCTAGTTATAGTTATAGGGTTTCTGCTTCTTGTTCGCCGTTCGTAGCCCTCCCAGCCGGTTCCCGACTCAACAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCAAAGCGAAGGCACTGGCGCCGCACTAAGCTCGTTCAGTTTGGTGCCATTTCTTCTCACGCTAGTTTGGAGTTATATTATGGTCTTGATCATTCAAGTATTCGTGTGAATGAGAGGAAGGGTTCCCGCTTCTTGTTCGCTGGTCGTACCCTCGCAGCTGGCTCCCGACTCCCCAAGATGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGAACCGACAATACCATCAGGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGTGATGTCAAATCGGAAGTTAATTTCGTGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGATTATTGTCTTGATCGTACAACCCCAACACAAAGAACAGATCCAACGAGTTACTTGTAGTTTGCATCGAAGTCCCTCCTCCGTTAACAAATTGCCCCTCGGACCCATCGCCTTCTCTCCTCCGCCTCGTTCTCTCTGTGGACCTCAATCTCCATTCTCATTGATCCCATTTCCATTAAGGTCCATGGCGTCCTCTATCCTCCCTCTTGCTTCCGCCTCCCCTTCCGCTTCACGTTCCTCACTTGAAAACAAGAAGGGGAAGTCGAACCTTGGAAGTAGCTGTGTAAGCTTTGATCATGACAAAAACCATCCATTCGCGAAGACGAAGTCCTTCAGCAGGATCTCTATGGTTGCTTCAGTTAATGTCTCTCGGTTTGAGGGGATAACGATGGCCCCTCCTGATCCAATTCTTGGAGTTTCCGAGGCTTTCAAAGCAGATACGCACGGAAACAAGCTCAACTTGGGAGTTGGTGCCTACCGCACAGAAGAACTACAACCTTATGTGCTTGATGTTGTGAAGAAGGTTGAGACACTTATGCTGGAGAGGGGAGATAACAAAGAGTATCTCCCAATTGAAGGTCTGGCAGCGTTTAATAAGGCGACAGCAGAGTTATTATTTGGAGCTGATAACCCAGTAATTAAGCAGCAACGAGTTGCAACTATTCAAGGTCTGTCAGGGACTGGTTCTCTTAGACTAGCAGCTGCTCTTATAGAACGATACTTCCCTGGTGCAAAAGTTCTTATATCTTCTCCAACTTGGGGGAATCATAAAAATATTTTCAATGATGCGAGAGTTCCATGGTCTGAGTATCGATATTATGACCCTAAAACAGTTGGTTTGGATTTTGAAGGGATGATGTCTGATATTAAGGCAGCACCTGAAGGATCTTTTGTGCTGCTTCATGGTTGTGCTCACAACCCAACTGGCATTGACCCAACACCTGAGCAGTGGGAAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATTCCGTTTTTTGATGTTGCATATCAGGGTTTTGCTAGTGGAAGCCTCGATGCAGATGCAGCATCTGTTAGGCTGTTTGCTGCTCGTGGTTTGGAGCTTTTGGTTGCTCAATCCTACAGTAAAAATCTTGGTCTTTATGCTGAAAGGATTGGGGCTATCAATGTCGTCTGCTCATCCACAGATTCAGCAACAAGGGTAAAGAGCCAGTTGAAGAGACTTGCTCGACCAATGTACTCAAATCCACCAGTTCATGGGGCTAGAATTGTTGCTAACATTGTTGGAGATCCAGCACTATTTAACGAGTGGAAAGCAGAAATGGAAATGATGGCTGGAAGAATTAAGAATGTTAGACAGAAGCTCTATGATAGTCTCTGTGCAAAAGATAAAAGTGGGAAAGATTGGTCCTTTATACTCAAGCAGATTGGCATGTTCTCATTCACAGGCTTGAGCAAAGTTCAGAGTGATAATATGACGGACAAGTGGCATGTATACATGACGAAGGATGGACGGATATCTTTGGCTGGATTGTCGTTAGCTAAGTGTGAATATCTCGCAGATGCCATCATTGATTCATTCCACAATGTACGATTAGCCGTTGTCATATTATGTATTCCATACTATGATAATATGAACACTGAAGAAACTAGAGATGAACGAAAAAGAGAGTGA 2268 45.11 MGRLETKIVTLNSSYSYRVSASCSPFVALPAGSRLNKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLVQFGAISSHASLELYYGLDHSSIRVNERKGSRFLFAGRTLAAGSRLPKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGDVKSEVNFVFSLVPFLLTLVIIVLIVQPQHKEQIQRVTCSLHRSPSSVNKLPLGPIAFSPPPRSLCGPQSPFSLIPFPLRSMASSILPLASASPSASRSSLENKKGKSNLGSSCVSFDHDKNHPFAKTKSFSRISMVASVNVSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVETLMLERGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMMSDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARGLELLVAQSYSKNLGLYAERIGAINVVCSSTDSATRVKSQLKRLARPMYSNPPVHGARIVANIVGDPALFNEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMFSFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVRLAVVILCIPYYDNMNTEETRDERKRE 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25038173 25048058 - ClG42_08g0151600.10 Clacu08g1516 255858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1516 755 FunFam 60S ribosomal protein-like L39 38 87 - -
Clacu08g1516 755 SUPERFAMILY PLP-dependent transferases 327 723 IPR015424 -
Clacu08g1516 755 ProSitePatterns Ribosomal protein L39e signature. 164 180 IPR020083 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu08g1516 755 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 571 584 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Clacu08g1516 755 Pfam Ribosomal L39 protein 46 86 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu08g1516 755 Pfam Ribosomal L39 protein 143 183 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu08g1516 755 PRINTS Aspartate aminotransferase signature 533 545 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Clacu08g1516 755 PRINTS Aspartate aminotransferase signature 601 626 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Clacu08g1516 755 PRINTS Aspartate aminotransferase signature 502 521 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Clacu08g1516 755 PRINTS Aspartate aminotransferase signature 670 688 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Clacu08g1516 755 ProSitePatterns Ribosomal protein L39e signature. 67 83 IPR020083 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu08g1516 755 SUPERFAMILY Ribosomal protein L39e 40 86 IPR023626 -
Clacu08g1516 755 Hamap Large ribosomal subunit protein eL39 [rpl39e]. 135 186 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu08g1516 755 PANTHER ASPARTATE AMINOTRANSFERASE 311 728 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Clacu08g1516 755 FunFam Aspartate aminotransferase 614 721 - -
Clacu08g1516 755 FunFam Aspartate aminotransferase 387 628 - -
Clacu08g1516 755 Gene3D Ribosomal protein L39e 38 87 IPR023626 -
Clacu08g1516 755 FunFam 60S ribosomal protein-like L39 135 185 - -
Clacu08g1516 755 Hamap Large ribosomal subunit protein eL39 [rpl39e]. 38 89 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Clacu08g1516 755 Pfam Aminotransferase class I and II 354 721 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Clacu08g1516 755 Gene3D Aspartate Aminotransferase, domain 1 332 721 IPR015422 -
Clacu08g1516 755 SUPERFAMILY Ribosomal protein L39e 137 184 IPR023626 -
Clacu08g1516 755 Gene3D - 387 628 IPR015421 -
Clacu08g1516 755 CDD AAT_like 356 721 - -
Clacu08g1516 755 Gene3D Ribosomal protein L39e 135 184 IPR023626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1516 K00811 - - csv:101213342 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1516 Clacu-Chr8:25038173 Clacu11g1592 Clacu-Chr11:27082392 9.70E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g325 Blo01g01369 Blo12g00761 . Bda03g00424 . Bpe02g00176 Bma04g00400 Bma01g02550 . . Cma01g01602 . Car09g00487 . . . Cpe06g00422 . . . . . . . . . . . . . . Cone4ag1531 Cone7ag1422 . . Lsi04g02230 Csa03g04441 Chy04g00259 . . . . . . Bpe04g00072 . . Sed05g1604 Cmo01g01649 Cmo09g00545 Cma09g00555 . Car01g01222 . . Cpe02g00376 Bhi09g02426 Tan01g3784 Cmetu04g1897 . Hepe01g2123 Mch11g0661 . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . Cme04g00290
Vvi4g534 . . . Bda03g00085 . . . . . . . . . . Sed11g1156 . . Bhi04g00034 Tan02g2749 Cmetu03g1805 . . . Lcy13g1814 . . . . . . . . Cone7ag1676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006495 1 2 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 2 1 37