Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1518 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGTGCCGACGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGCGCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATCGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTACCACCGTCTCCGGCGTTTTGA 495 48.89 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25064303 25064892 + ClG42_08g0151800.10 Clacu08g1518 255860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1518 164 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Clacu08g1518 164 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1518 164 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1518 164 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Clacu08g1518 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1518 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1518 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 107 IPR050913 -
Clacu08g1518 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1518 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1518 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1801 Clacu-Chr5:27228248 Clacu08g1518 Clacu-Chr8:25064303 2.40E-52 dispersed
Clacu06g1202 Clacu-Chr6:22624641 Clacu08g1518 Clacu-Chr8:25064303 7.50E-26 dispersed
Clacu07g1247 Clacu-Chr7:27294846 Clacu08g1518 Clacu-Chr8:25064303 2.40E-38 dispersed
Clacu08g1518 Clacu-Chr8:25064303 Clacu09g0325 Clacu-Chr9:2770688 1.20E-44 dispersed
Clacu08g1517 Clacu-Chr8:25057042 Clacu08g1518 Clacu-Chr8:25064303 9.30E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48205 PF00847 AP2 9.50E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1518 - - - 0.0