Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1533 ATGGCAGGTTTCTCAAGAGCTCTGTTTCTTCTCACCTTCCTCCTCTTCAGCTTCTCAGAAGCTAGAGAGATATTGATCGGAGGCAAATCCGACGCCTGGAAAATTCCTTCTTCTCAATCTCAATCTCTCAATCAATGGGCTGAAGCCTCCCGCTTTCGCATCGGCGACACTCTCGTGTGGAATTACGAAGAAGGGAAAGATTCGGTACTGAAAGTGAGGAAGGAAGATTACGAAGCCTGCAATACCGTAAGCCCAGAACAGAGATTTGAGGATGGGAATACGAAAGTTGAGCTACAGAGACCAGGGCCATTTTATTTCATCAGTGGGGCAAAGGGCCATTGCGAGCAGGGCCAGAAGCTGATCGTTGTGGTTGTGACTCCTCGCCGCAGGTTCATCGGCATCTCTTCGGCGCCTTCTCCCGCGGAGAGTGAGGGTCCGGCGGTTGCTCCGTCGAGTGGAGCTGCAAATTTGAAGGTTGGACTTTTGGCGGTGATCGTCGGAATTTTGGGTGTTGGAATTGGTTTGTTGTGA 531 50.85 MAGFSRALFLLTFLLFSFSEAREILIGGKSDAWKIPSSQSQSLNQWAEASRFRIGDTLVWNYEEGKDSVLKVRKEDYEACNTVSPEQRFEDGNTKVELQRPGPFYFISGAKGHCEQGQKLIVVVVTPRRRFIGISSAPSPAESEGPAVAPSSGAANLKVGLLAVIVGILGVGIGLL 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25231883 25232493 + ClG42_08g0153300.10 Clacu08g1533 255875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1533 176 FunFam Early nodulin-like protein 1 21 129 - -
Clacu08g1533 176 PANTHER BLUE COPPER PROTEIN 16 134 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Clacu08g1533 176 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Clacu08g1533 176 Gene3D - 21 128 IPR008972 -
Clacu08g1533 176 CDD OsENODL1_like 22 124 IPR041846 -
Clacu08g1533 176 Pfam Plastocyanin-like domain 33 118 IPR003245 GO:0009055(InterPro)
Clacu08g1533 176 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0180 Clacu-Chr3:1984794 Clacu08g1533 Clacu-Chr8:25231883 2.60E-07 dispersed
Clacu08g1533 Clacu-Chr8:25231883 Clacu10g0541 Clacu-Chr10:6523891 3.30E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1533 - - - 0.0