Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1554 ATGGAGGAAGCCGGTCCCAAACCCAAGAAGGCCGTCTCTTCCCTTTGCTGCTTATGCAACAACAGGAAAGCTGCTCTCAAGAGGCCCAAAACCCTCCAACAGATATGCAGAGAATGTTTCTATGAGGTTTTTGAGGAGGAGATCCACCAAGTTATTGTGAAGAATCAGTTGTTCAGACCTGGGGAACGCATTGCGGTTGGTGCATCTGGTGGAAAAGATTCTACCGTTCTTGCTTATGTGTTATCAGAATTGAATCGGCGGCACAATTATGGTTTAGATCTCTTTCTCTTATCAGTTGATGAGGGCATCACTGGATACAGAGACGACTCTCTTGAAACTGTGAAAAGAAACGAAATTCAGTACGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATCGTGAAGATGATTGGTTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGACGACAGGCTCTTGATAGAGGTGCTGCACTGTTGAAAGTAGATAAGCTTGCCACGGGGCACAATGCAGATGACATGGCTGAAACAGTTCTATTAAATATTTTACGAGGTGATATTGCAAGATTGAGTAGATGTACGGCAATAGTAACAGGTGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTAATATATCCTTTTGTTGTAAAGCTGGACTACTTCTCCACCGAGTGCATTTATTCTCCAAATGCTTATCGTGGTTTTGCTCGTGAATTTATCAAGGATTTGGAAAGAATCAGACCTAGGGCCATTCTTGATATCATTAAATCGGGTGAGGATTTCAGGATTTCCACTTCAACAAAAATGCCTGAGCAAGGGACGTGTGAACGATGCGGCTACATTTCAAGCCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGAGGGCCTGAACCGAGGTTTGCCGAAGCTGGGTATTGGGCGCAGTCGGGGGCATGATAGCGAGGGGAAGAGGGAAACGAATGGAAGTAGTGATGGACATAAGAGAAGCATTGAGAGCAAACAGTGTGGAACTCTAGACTTCTGA 1077 43.36 MEEAGPKPKKAVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIVTGEDGPIPRCKPFKYTYEKEIVIYPFVVKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKLGIGRSRGHDSEGKRETNGSSDGHKRSIESKQCGTLDF 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25385243 25389683 + ClG42_08g0155400.10 Clacu08g1554 255896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1554 358 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 14 326 IPR000541 GO:0000049(InterPro)|GO:0002098(InterPro)|GO:0034227(InterPro)
Clacu08g1554 358 MobiDBLite consensus disorder prediction 324 352 - -
Clacu08g1554 358 CDD Alpha_ANH_like_II 63 249 - -
Clacu08g1554 358 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 14 335 - GO:0000049(PANTHER)|GO:0002143(PANTHER)|GO:0002144(PANTHER)|GO:0005739(PANTHER)
Clacu08g1554 358 Pfam Zinc-ribbon 291 321 IPR032442 -
Clacu08g1554 358 FunFam Cytoplasmic tRNA 2-thiolation protein 1 16 332 - -
Clacu08g1554 358 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 49 279 - -
Clacu08g1554 358 Pfam PP-loop family 64 243 IPR011063 -
Clacu08g1554 358 PIRSF ATPase_YdaO 12 323 IPR035107 GO:0008033(InterPro)
Clacu08g1554 358 MobiDBLite consensus disorder prediction 324 358 - -
Clacu08g1554 358 Gene3D HUPs 15 331 IPR014729 -
Clacu08g1554 358 NCBIfam TIGR00269 family protein 213 313 IPR000541 GO:0000049(InterPro)|GO:0002098(InterPro)|GO:0034227(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1554 K14168 - - csv:101212318 698.738
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g135 . . . . Bpe02g00324 . . Bma01g02099 . . . . . . . . . Bhi04g00091 . . . . . . Cla08g01387 Cam08g1860 Cec08g1439 Cco08g1571 Clacu08g1554 . Cre08g1338 . . . . . . . Cme03g01549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01277 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013567 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 24