Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1558 ATGAACTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTCTCCAACCAACTTCACCTCCTTGGGAAAGTCGAGGTTTTTAAACTCCATGGTCGGGATAAAGCTTCCCGGAATGTCCTCCTTATTGTCGGAAAATACTTTCCAGCTCGGTTTGTGAGCAGTCAGGCCGTGAATGTCTATTTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCTTTCACGGTGGTGTACATTCACACTGATGTTCATTGGACAGAGAATTTCCCTGGAGTTTCCAATCTCAAGGCAATCTATGAGGCCATTCCAATCACCATTAAGAACAACATTGAAGCTGTTTATTTTCTCCACCCCGGCTTGCAAGCCCGTGTGTTTTTCGCCACCGTCGGCCGCCTCATGCTCGACACCGAGTTGTATAACAAGGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAATATGTTAGAAGGAAAGAAATGGAGTTACCGCAGTTTGTGTATGATCATGATGAGAAATTGGAGTTTTGTCCTGTGATGGACTCTGAATTAGAGAATGATTATCTCAGGCTCTTCTCCCCCTCGCCATCTGTGGATTCTGCAGTTTCTACGTACTCCATGAGGTGTTTTGCATGA 630 44.6 MNSSSSSSSSPPLSNQLHLLGKVEVFKLHGRDKASRNVLLIVGKYFPARFVSSQAVNVYLKDKIFPFLKDGPFTVVYIHTDVHWTENFPGVSNLKAIYEAIPITIKNNIEAVYFLHPGLQARVFFATVGRLMLDTELYNKVKYVKRVEFLWEYVRRKEMELPQFVYDHDEKLEFCPVMDSELENDYLRLFSPSPSVDSAVSTYSMRCFA 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25438149 25438975 - ClG42_08g0155800.10 Clacu08g1558 255900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1558 209 Gene3D - 20 172 IPR036865 -
Clacu08g1558 209 PANTHER OS01G0948300 PROTEIN 17 206 - -
Clacu08g1558 209 Pfam Divergent CRAL/TRIO domain 36 170 IPR001251 -
Clacu08g1558 209 SMART sec14_4 19 168 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1558 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1558 Clacu-Chr8:25438149 Clacu10g0037 Clacu-Chr10:785561 2.70E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g145 . . . . . . . . Cmo05g00333 . . . . . . . . Bhi04g00086 . . . . . . Cla08g01391 Cam08g1864 Cec08g1443 Cco08g1576 Clacu08g1558 . Cre08g1342 . . Cone17ag1433 Cone20ag0050 . . . . . . . . . . . . . . . . Cma05g00330 Car05g00277 . . . . . . . . . . . . . . . . . Lsi08g01282 . Chy03g01052 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002691 0 2 0 1 1 2 3 2 2 2 2 2 3 1 2 4 2 1 3 2 2 2 2 2 2 2 2 3 2 1 57