Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1564 ATGAACGGTCATGATGCGGAGCCGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATTTGCTAACGGAACGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGAAGAAGGATAAGGATGATCATCAGCATCACCGGAAGATTATTACTAGTGATCCTTACGTCACTGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTGTCTGGAATGAGCACTTCAAAATCCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTCAAGGATAACGATGTGTTTGGTGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGCAGAGTTCTTTCTGGCGAAACCATAGATGATTGGTTTCCGATTATCGGTTCGTTCGGGAAACCGCCGAAGCCGGATTCGGCGGTGCGTTTGGAAATGAAATTCACCAAGTGCGAGGAGAATCCTCTGTACCGTTATGGCATTGCGGCCGATCCCGAACATTTTGGCGTTCGGAATTGTTATTTTCCGGTACGGCATGGAGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGATTCCATGTTGGAGAAGATTGAATTGGAAAAGGGGAATGTGTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATCGCCGGTTGGTCCATATATCATAAGGTGAAGCTGGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGGAATTTGAACCTGGGAGAGTTGCTCAAGTACAAGTCACAGGAAGGTGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAATTCTTCATTAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTATCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTTGTTGGAACGCTTTTCACCCATCACCAGAAGTGCGTGATTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTTCTTTTATTGGAGGACTTGACCTTTGCGATGGTCGTTATGATACTCCTGAGCATCGGTTGTTAAAAGATCTTGACACTGTATTTGAGGATGATTATCACAATCCAACTTTTTCTGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCGGCATATGATGTGCTCACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCCGAATTAGGTCAGCGGTTCAAAAGAGTATCGCATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTCAGTCCCCAACGATGATCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGGCAATTGGCATGTTCAGGTTTTCCGGTCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCAATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTTGGATCGTCATTTGCGTGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAATTGGCGTTGAAGATTGCTAGTAAGATAAGAGCGAATGAGAGGTTTGCTGTCTACGTTGTAATACCAATGTGGCCTGAAGGGGTTCCCACTTCTGTTTCTGTGCAAGAAATCCTATTTTGGCAGGGTCAGACAATCCAAATGATGTATGAAGTCATTGGAAGAGAGTTGAAATATAAGAATCTTGAGAACGCTCATCCCTCAGACTACCTGAACTTTTTCTGTCTTGGAAATAGGGAACCGCACGAGGACTTGACATGTTCCTCTGGTCATTCTTCCAAGAGCGAAGATGTGGTTCCAGACTCACAAAAGTTCCGTAGATTCATGATATATGTGCATGCGAAAGGAATGATTGTTGATGATGAGTATGTAATAATAGGGTCTGCAAATATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGCGCATATCAACCCAGTTACACATGGGGTAAGAAGAAACGACATCCACAAGGCCAGGTTTATGGCTATAGAATGTCGCTCTGGGCTGAACATTTGGGAAACATTGACGATTGCTTCAAGGAGCCCGAAAGTTTGACTTGTGTGAAGGCAGTCAACAAGATAGCTGAAGATAACTGGAAGAAATACACCGCAACGGAATTTGTGCCATTGCAAGGGCACCTCCTTAAGTACCCGATCGAGGTCAGCCAAAGTGGGAAGATAGGTCCATTGACTGGACACGAGACTTTCCCTGACTTTGGTGGTAAGGTCCTTGGAGCTCGATCTAACCTCCCTGATGCTCTTACTACATAA 2544 44.69 MNGHDAEPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKKKDKDDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPVWNEHFKIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGETIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEENPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPDSMLEKIELEKGNVYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNYRKISSFIGGLDLCDGRYDTPEHRLLKDLDTVFEDDYHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPGNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGVPTSVSVQEILFWQGQTIQMMYEVIGRELKYKNLENAHPSDYLNFFCLGNREPHEDLTCSSGHSSKSEDVVPDSQKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGSRDTEIAMGAYQPSYTWGKKKRHPQGQVYGYRMSLWAEHLGNIDDCFKEPESLTCVKAVNKIAEDNWKKYTATEFVPLQGHLLKYPIEVSQSGKIGPLTGHETFPDFGGKVLGARSNLPDALTT 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25477023 25482311 - ClG42_08g0156400.10 Clacu08g1564 255906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1564 847 PANTHER PHOSPHOLIPASE D 11 835 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu08g1564 847 PIRSF PLD_plant 1 847 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Clacu08g1564 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824(InterPro)
Clacu08g1564 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 169 IPR035892 -
Clacu08g1564 847 SMART C2_3c 15 144 IPR000008 -
Clacu08g1564 847 Gene3D C2 domain 12 175 IPR035892 -
Clacu08g1564 847 Pfam Phospholipase D Active site motif 695 720 IPR001736 GO:0003824(InterPro)
Clacu08g1564 847 SUPERFAMILY Phospholipase D/nuclease 202 456 - -
Clacu08g1564 847 SMART pld_4 350 385 IPR001736 GO:0003824(InterPro)
Clacu08g1564 847 SMART pld_4 693 720 IPR001736 GO:0003824(InterPro)
Clacu08g1564 847 FunFam Phospholipase D delta 222 465 - -
Clacu08g1564 847 Pfam C2 domain 15 146 IPR000008 -
Clacu08g1564 847 CDD C2_plant_PLD 10 168 - -
Clacu08g1564 847 SUPERFAMILY Phospholipase D/nuclease 539 778 - -
Clacu08g1564 847 Gene3D Endonuclease Chain A 521 739 - -
Clacu08g1564 847 Gene3D Endonuclease Chain A 215 468 - -
Clacu08g1564 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824(InterPro)
Clacu08g1564 847 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Clacu08g1564 847 Pfam Phospholipase D C terminal 767 837 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0475 Clacu-Chr6:5534722 Clacu08g1564 Clacu-Chr8:25477023 1.80E-39 dispersed
Clacu07g1268 Clacu-Chr7:27519475 Clacu08g1564 Clacu-Chr8:25477023 3.10E-197 dispersed
Clacu08g1488 Clacu-Chr8:24856431 Clacu08g1564 Clacu-Chr8:25477023 1.80E-199 dispersed
Clacu08g1564 Clacu-Chr8:25477023 Clacu09g0279 Clacu-Chr9:2499428 2.10E-196 dispersed
Clacu06g0019 Clacu-Chr6:419311 Clacu08g1564 Clacu-Chr8:25477023 6.00E-271 transposed
Clacu10g0341 Clacu-Chr10:4306257 Clacu08g1564 Clacu-Chr8:25477023 7.80E-252 transposed
Clacu01g2129 Clacu-Chr1:32931600 Clacu08g1564 Clacu-Chr8:25477023 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1564 K01115 - csv:101213442 1678.3