Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1567 ATGGAAGAAATTTGGAAGCTAAGCCATTTGTTGGTCACAGTATTTTTATACACTTTTGCAACCATGATGATCATTCCAGCCATTACAGATGTGACCATGTCGGCTCTTTGTCCCGGTCAAGACGAGTGTTCTCTCGCTATTTACTTCACCGGCTTTCAACAAATCGTGACGGGGGTTGGGGCGTTGCTAATGATGCCATTAGTGGGAAACTTGTCGGACAAGTATGGAAGAAAGACTATGCTCACAATTCCTATGATTCTCACCGTAATTCCCCTGGGGATATTAGGGTATGGGAGATCGAGGGATTTGTTCTACGTTTATTTTGTGTTCAAGTGTGTGACGAGTACGGTTTGTGAAGGGAGCGTTCAGTGTTTGGCAATTGCTCATGCGGCTGACAATGTACCGGAGCACCGGAGAGCCTCTGCATTCGGACTACTATCCGCCATTGGATCTTCTGCTTTCGTCTGCGGGACTCTTTGTGCTCGTTTTCTCTCCATTCCGTCCACTTTTCAGGTAGCGGCTTTCATGGCGGCTGTGGCGGCAATTTATATGAGGATTTTCCTTACTGATTCTGTCGCCGATTGCAATCATTCTGCTCCCTTACTGTCTGGGGAGAATGTAGAATCTGTTTCTTCGGATACAGTTTCGCCCAAAAAAGAACAAATTATTTCGACCTTGCCTTCACTGAAGGACCTTTTTGCACTGTTGAAGACTAGCTTGACATTTTTACAAGCGGCCATTGTTGCATTTTTTTGCAATCTTGCTGATGTTGGCCTTCATGCTTCTATACTGTACTATTTAAAAGCCAGATTTCACTTTAACAAGGATAGGTTTGCTGATTTGATGGTGATTTCTGGGGCTGCTTCAACTATTTCACAGCTACTTTTAATGCCCATCTTGGTTCCTGCTCTAGGAGAGCACAGGCTGCTCTCAGTTGGACTCTTTTTCAACTGCATTCATATGCTTCTTTACAGCTTTGCTTGGGCTGACTGGGTTGCCTACGTTGCTGGAATGTTTTCCATTTGGTTTATTTTCTGGCGGCCTTGTCTACAAAGCATAGTATCAAAGCAAGTTGGTGCAAGCGAGCAGGGTAAGGCTCAAGGATGCATTTCAGGCATATCTTCATTTGCCAACGTTGTTTCTCCATTGGTATTCTCCCCTTTAACAGCTTTGTTTCTCTCTGAAAACGCTCCATTTTATTTCCCTGGATTTAGCATTATGTGCGCTGGATCTGCAGCGATGATAGCATTTGGTCAGAGTATGATGATTAGGGATCCTATCAAAGCCAGCGGTAGCAGCCATGTGGAAGTCTAG 1314 44.6 MEEIWKLSHLLVTVFLYTFATMMIIPAITDVTMSALCPGQDECSLAIYFTGFQQIVTGVGALLMMPLVGNLSDKYGRKTMLTIPMILTVIPLGILGYGRSRDLFYVYFVFKCVTSTVCEGSVQCLAIAHAADNVPEHRRASAFGLLSAIGSSAFVCGTLCARFLSIPSTFQVAAFMAAVAAIYMRIFLTDSVADCNHSAPLLSGENVESVSSDTVSPKKEQIISTLPSLKDLFALLKTSLTFLQAAIVAFFCNLADVGLHASILYYLKARFHFNKDRFADLMVISGAASTISQLLLMPILVPALGEHRLLSVGLFFNCIHMLLYSFAWADWVAYVAGMFSIWFIFWRPCLQSIVSKQVGASEQGKAQGCISGISSFANVVSPLVFSPLTALFLSENAPFYFPGFSIMCAGSAAMIAFGQSMMIRDPIKASGSSHVEV 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25502246 25510574 - ClG42_08g0156700.10 Clacu08g1567 255909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1567 437 Pfam Major Facilitator Superfamily 10 382 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu08g1567 437 CDD MFS_SLC46_TetA_like 10 422 - -
Clacu08g1567 437 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 417 - -
Clacu08g1567 437 SUPERFAMILY MFS general substrate transporter 10 416 IPR036259 -
Clacu08g1567 437 PRINTS Tetracycline resistance protein signature 366 389 IPR001958 GO:0022857(InterPro)
Clacu08g1567 437 PRINTS Tetracycline resistance protein signature 306 327 IPR001958 GO:0022857(InterPro)
Clacu08g1567 437 PRINTS Tetracycline resistance protein signature 56 72 IPR001958 GO:0022857(InterPro)
Clacu08g1567 437 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857(InterPro)
Clacu08g1567 437 Gene3D MFS general substrate transporter like domains 5 418 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1567 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0413 Clacu-Chr2:3718418 Clacu08g1567 Clacu-Chr8:25502246 5.70E-119 dispersed
Clacu02g1155 Clacu-Chr2:22905831 Clacu08g1567 Clacu-Chr8:25502246 4.20E-116 dispersed
Clacu08g0968 Clacu-Chr8:19765797 Clacu08g1567 Clacu-Chr8:25502246 1.60E-67 dispersed
Clacu08g1566 Clacu-Chr8:25488115 Clacu08g1567 Clacu-Chr8:25502246 6.50E-202 tandem
Clacu08g1567 Clacu-Chr8:25502246 Clacu08g1568 Clacu-Chr8:25512658 3.40E-203 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g159 . . . . . . . . Cmo05g00330 . . . . . . . . . . . . . . . Cla08g01397 Cam08g1874 Cec08g1451 Cco08g1585 Clacu08g1567 . Cre08g1351 . . . . . . . Cme03g01539 Blo17g00734 . Bda08g01188 . . Bpe05g00163 . . . . . . Cma05g00327 Car05g00274 . . . . . . . . . . . . . . . . . Lsi08g01291 . Chy03g01047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000412 3 14 3 1 3 5 3 5 5 4 3 5 2 4 5 2 5 1 3 5 4 3 4 4 3 6 3 4 9 2 123