Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1576 ATGTTTAATAATCTCATCTTCACCTTTATTCTCCTTTTTTCCTCCCTTCTTCCCTCTTTCAATGCCTTGAGCCATCGTTACTATGACCACACATGCCCTAATCTCGAGTCCATTGTTGCCCGAGAAGTCCACTTAGCCACTGCCAACGACAAGACCGTCCCTGCTGCATTGCTTCGAATGCACTTCCATGATTGTTTCATTAGAGGTTGTGATGGCTCTGTGCTTCTCGACTCCAAGGGAAAGAACACAGCCGAAAAAGATGGCCCTCCCAACATATCCCTCCATGCTTTTTATGTCATTGACAATGCCAAGAAAGCCATTGAATCTACCTGCCCTGGCGTCGTTTCTTGCGCTGATATCTTAGCCCTTGCTGCTCGAGATGCCGTTGTTTTGTCTGGAGGTCCTCATTGGGAAGTCCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAAGCTATTGAAACTAGACAATTACCAGCTCCCACATTCAACTTCTCTCTGCTCCAACAAAGCTTCTCCCAAAGGGGCCTTTCTTTACAAGATCTTGTTGCTCTTTCAGGCGGCCACACTCTTGGATTTGCTCATTGCTCGTCGTTCCAAAACCGAATCCACAACTTCAACTCGAGCCTCGACGTCGACCCGTCATTGCAGCCGGCATTTGCGGCCAGCCTCCGGAGCATATGTCCGGCGAGAAACAAGGTGAAAAATGCGGGTTCGGCCATGGATTCAACTTCCACAGTATTTGACAATGTATATTTCAAGCTTCTTCTACAAGGGCGGAGCATTTTTTCATCAGGTCAATCTTTGCTTTCAAATCCCAAAACAAAAGCTTTGGTTTCAAGATTTGCGAATGAACAACATCTCTTTGAGAAGGCTTTTGTGAAGTCAATGGTGAAGATGAGTCAGATCGCCGGCGCCGGCCAAGAAGTCCGGCTAAACTGCAGGGTGGTCAGATGA 954 46.86 MFNNLIFTFILLFSSLLPSFNALSHRYYDHTCPNLESIVAREVHLATANDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESTCPGVVSCADILALAARDAVVLSGGPHWEVPKGRKDGRISKAIETRQLPAPTFNFSLLQQSFSQRGLSLQDLVALSGGHTLGFAHCSSFQNRIHNFNSSLDVDPSLQPAFAASLRSICPARNKVKNAGSAMDSTSTVFDNVYFKLLLQGRSIFSSGQSLLSNPKTKALVSRFANEQHLFEKAFVKSMVKMSQIAGAGQEVRLNCRVVR 317
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 25585299 25586574 - ClG42_08g0157600.10 Clacu08g1576 255918
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1576 317 PANTHER PEROXIDASE 25-RELATED 24 313 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu08g1576 317 Gene3D - 26 316 - -
Clacu08g1576 317 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 CDD secretory_peroxidase 23 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 Gene3D Peroxidase, domain 2 158 299 - -
Clacu08g1576 317 FunFam Peroxidase 26 161 - -
Clacu08g1576 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Clacu08g1576 317 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 FunFam Peroxidase 158 299 - -
Clacu08g1576 317 ProSiteProfiles Plant heme peroxidase family profile. 22 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu08g1576 317 Pfam Peroxidase 40 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1576 Clacu-Chr8:25585299 Clacu09g1599 Clacu-Chr9:27754653 1.90E-65 dispersed
Clacu01g2119 Clacu-Chr1:32859019 Clacu08g1576 Clacu-Chr8:25585299 1.50E-118 transposed
Clacu04g0304 Clacu-Chr4:10905646 Clacu08g1576 Clacu-Chr8:25585299 2.30E-71 transposed
Clacu05g0911 Clacu-Chr5:8078153 Clacu08g1576 Clacu-Chr8:25585299 1.40E-93 transposed
Clacu05g1760 Clacu-Chr5:26748561 Clacu08g1576 Clacu-Chr8:25585299 7.60E-62 transposed
Clacu01g2109 Clacu-Chr1:32781139 Clacu08g1576 Clacu-Chr8:25585299 1.80E-10 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1576 K00430 - csv:101214403 565.074