Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1588 ATGGCGGCGGACGGATTTCAATTTCTATTGGGGCTCTTAAGTCTGCTGCTTTTGGTACCAGGTGGGTTTTCGACGAGCTTTACTTTTGTGAACAAATGTGGATTCACGGTTTGGCCGGGGGTTCTGTCGAACGGTGGCGTTCCACCGCTTCCCACTACTGGCTTCTCTCTTCAGACTGGAGAGTCCAAGACACTACCGGCGCCGGCGTCTTGGGGCGGGCGTTTCTGGGGGCGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGCGCTACTGGCGACTGTGGCTCTAACAAACTAGAGTGTGCTGGAAACGGAGCAACGCCACCGGCGACTCTCGCGGAGTTCACCCTCGACGGCTCCGGCGGGCTTGATTTCTTCGACGTTAGTCTGGTGGACGGTTACAATCTTCCGATGATTGTGGTGCCTCAGGGTGGTTCCGGCGACAACTGCACGAGCACCGGCTGCGTGGTGGATCTGAACGGCGCGTGTCCATCAGAGTTGCGCGTGACGAGTGCCGACGGAAGAGAAGGCGTGGCGTGTAAAAGCGCGTGTGATGCCTTCAATCAACCGCAGTATTGTTGCACAGGCGCGTACCAAACACCGGATACTTGTCAGCCATCGATGTACTCTCAGATCTTCAAGAGAGCGTGCCCACGCGCTTACAGCTACGCGTACGATGATAAGACGAGTACTTTCACATGCGCTAGTGCTGATTACGTCATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCCTCGGAGGCACAGAATTTACCTGCGACGGCGAACCCATCTTCCGGCGGCGATGGTGCGATGGTGTACGAAGGTGCATCCCTAATTCAAACCGACTCAGCGCCACCGCGCTTACCCGGGATTTCGGCGGTCGGTGCGGTGGCGATTTGGTGGTTGTGGCAGCTGTTCTTCTACTTCTGA 942 56.37 MAADGFQFLLGLLSLLLLVPGGFSTSFTFVNKCGFTVWPGVLSNGGVPPLPTTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNLPATANPSSGGDGAMVYEGASLIQTDSAPPRLPGISAVGAVAIWWLWQLFFYF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25687075 25688462 - ClG42_08g0158800.10 Clacu08g1588 255930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1588 313 Gene3D Thaumatin 25 247 IPR037176 -
Clacu08g1588 313 PANTHER OS03G0233200 PROTEIN 14 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Clacu08g1588 313 SMART tha2 27 247 IPR001938 -
Clacu08g1588 313 CDD TLP-PA 26 246 - -
Clacu08g1588 313 Pfam Thaumatin family 31 247 IPR001938 -
Clacu08g1588 313 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Clacu08g1588 313 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Clacu08g1588 313 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Clacu08g1588 313 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Clacu08g1588 313 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Clacu08g1588 313 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Clacu08g1588 313 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1209 Clacu-Chr2:24572103 Clacu08g1588 Clacu-Chr8:25687075 6.80E-99 dispersed
Clacu05g1984 Clacu-Chr5:28928643 Clacu08g1588 Clacu-Chr8:25687075 7.00E-126 dispersed
Clacu05g2665 Clacu-Chr5:34287177 Clacu08g1588 Clacu-Chr8:25687075 9.10E-78 dispersed
Clacu08g1588 Clacu-Chr8:25687075 Clacu10g0071 Clacu-Chr10:1032698 1.50E-91 dispersed
Clacu08g1587 Clacu-Chr8:25671424 Clacu08g1588 Clacu-Chr8:25687075 1.80E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1588 - - - 0.0