Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1601 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGAGTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTCGACGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTCCCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGAAAAAATTACCTCCGAAGGAATTCCTCACATGATAAAGAGAGTAATAATGAAGTATTATCAACTCTCAGCTCAAAGATATGAAGTGTTTATGTCTATTCTCCACAGCATTTTTGTTGAAGAGGTATGCTTGAGATCTCCTTACTTACAGCTCTTCGTTTTATTTCCTTACTCTTTCCAAATGCTTGGGGCAATTGATTGTGCTGTATATCACCCTATCCATATTTATATGATACTGTAA 1455 41.17 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDESEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYAEERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRIFPLHNNIDDDYWFQSNSQVSITHLWEKITSEGIPHMIKRVIMKYYQLSAQRYEVFMSILHSIFVEEVCLRSPYLQLFVLFPYSFQMLGAIDCAVYHPIHIYMIL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25789362 25793692 + ClG42_08g0160100.10 Clacu08g1601 255943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1601 484 Gene3D - 227 337 - -
Clacu08g1601 484 PANTHER TRANSCRIPTION FACTOR E2F 78 406 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Clacu08g1601 484 MobiDBLite consensus disorder prediction 55 69 - -
Clacu08g1601 484 MobiDBLite consensus disorder prediction 48 70 - -
Clacu08g1601 484 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu08g1601 484 FunFam E2F transcription factor 1 149 222 - -
Clacu08g1601 484 Gene3D - 150 222 IPR036388 -
Clacu08g1601 484 MobiDBLite consensus disorder prediction 98 154 - -
Clacu08g1601 484 Coils Coil 243 274 - -
Clacu08g1601 484 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Clacu08g1601 484 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu08g1601 484 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Clacu08g1601 484 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Clacu08g1601 484 MobiDBLite consensus disorder prediction 98 123 - -
Clacu08g1601 484 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1601 K06620 - - csv:101211469 666.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2289 Clacu-Chr2:35927389 Clacu08g1601 Clacu-Chr8:25789362 5.30E-61 dispersed
Clacu06g1773 Clacu-Chr6:28275372 Clacu08g1601 Clacu-Chr8:25789362 7.60E-08 dispersed
Clacu04g1090 Clacu-Chr4:25111008 Clacu08g1601 Clacu-Chr8:25789362 1.30E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g1485 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
Clacu10g0919 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Clacu02g2289 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.5e-119 426.8
Clacu04g1090 . 11 465 E2F-DP Transcription Factor Family AT2G36010 54.4 4.5e-119 425.2
Clacu02g2289 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.4e-115 411.4
Clacu04g1090 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Clacu08g1601 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Clacu08g1601 . 151 410 E2F-DP Transcription Factor Family AT1G47870 53.8 1.6e-66 250.4
Clacu02g2289 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Clacu10g0919 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Clacu02g2289 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.4e-115 411.4
Clacu04g1090 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Clacu08g1601 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Clacu02g2289 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.5e-119 426.8
Clacu04g1090 . 11 465 E2F-DP Transcription Factor Family AT2G36010 54.4 4.5e-119 425.2
Clacu08g1601 . 151 410 E2F-DP Transcription Factor Family AT1G47870 53.8 1.6e-66 250.4
Clacu02g2289 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Clacu01g1485 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.2e-102 367.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48209 PF16421 E2F_CC-MB 2.20E-26 No_clan Clacu TF