Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1601 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGAGTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTCGACGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTCCCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAGTGAGTATTACGCATTTATGGGAAAAAATTACCTCCGAAGGAATTCCTCACATGATAAAGAGAGTAATAATGAAGTATTATCAACTCTCAGCTCAAAGATATGAAGTGTTTATGTCTATTCTCCACAGCATTTTTGTTGAAGAGGTATGCTTGAGATCTCCTTACTTACAGCTCTTCGTTTTATTTCCTTACTCTTTCCAAATGCTTGGGGCAATTGATTGTGCTGTATATCACCCTATCCATATTTATATGATACTGTAA 1455 41.17 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDESEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYAEERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRIFPLHNNIDDDYWFQSNSQVSITHLWEKITSEGIPHMIKRVIMKYYQLSAQRYEVFMSILHSIFVEEVCLRSPYLQLFVLFPYSFQMLGAIDCAVYHPIHIYMIL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25789362 25793692 + ClG42_08g0160100.10 Clacu08g1601 255943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1601 484 Gene3D - 227 337 - -
Clacu08g1601 484 PANTHER TRANSCRIPTION FACTOR E2F 78 406 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Clacu08g1601 484 MobiDBLite consensus disorder prediction 55 69 - -
Clacu08g1601 484 MobiDBLite consensus disorder prediction 48 70 - -
Clacu08g1601 484 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu08g1601 484 FunFam E2F transcription factor 1 149 222 - -
Clacu08g1601 484 Gene3D - 150 222 IPR036388 -
Clacu08g1601 484 MobiDBLite consensus disorder prediction 98 154 - -
Clacu08g1601 484 Coils Coil 243 274 - -
Clacu08g1601 484 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Clacu08g1601 484 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu08g1601 484 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Clacu08g1601 484 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Clacu08g1601 484 MobiDBLite consensus disorder prediction 98 123 - -
Clacu08g1601 484 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2289 Clacu-Chr2:35927389 Clacu08g1601 Clacu-Chr8:25789362 5.30E-61 dispersed
Clacu06g1773 Clacu-Chr6:28275372 Clacu08g1601 Clacu-Chr8:25789362 7.60E-08 dispersed
Clacu04g1090 Clacu-Chr4:25111008 Clacu08g1601 Clacu-Chr8:25789362 1.30E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48209 PF16421 E2F_CC-MB 2.20E-26 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1601 K06620 - csv:101211469 666.381