Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1606 ATGCGAGGATTGCACGAAGGGAAAAGGGTTTCATGGGCGTCAGATCTTAATCTCCGTCAGGTTAGGTTGTTTTTGTCTGAGGATTGTCCATCCGAAGTGGGATTGGGTGCTCAAGATCACCTTCAGGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTTTGGGTTCTGACGACACTTTGCCTCCTGGATTTGAAGTAGCTCATCCAGAGAATCAGTGGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCGCCTAAGTTTGTGCTGAATTTGATGTGGCGAGTGGTTGTTGGTGAAGAAAGCCAAGAGGTAGATGTTGAAAATCAGAGAGAGATGAGAGTACTTGAAGCGGTTTATCCTCGGGCATCTGCAATTCCTCCTAACCCTTCCGTAGTACCTGATTCAGAACGTGCCAGTGTCGATGACAGTCGGACACCTCTGATTCCCATTACTCCTGTTGAAGACGAAGATGCAACAACCGAGACCTCTGATTACGCAAGTCCTGCTGCTGTCTTTATGAGTGCACAGCCCTCCCTGTTTACTTCTGCTGGCACATCCACATCTCAACATGTTTTACTGAATGCGATGTCTTCTACTTCTAGTTTGAGTTCCATGGCTGGAATGGATCTTGGCAATGAACGTGATGTTGTAGCTGCTGCATCAGCGGCACTCAGTGCACTAGTGAAGAGCAATGAGGTAGGTAGCTCGATTGACCGCGAATTGCTTGTTAATATTCTCAACAATCCAAAAATGATTGAACAGCTGGTTGTGGATTCTGGTGCTGTCACTAGCACTCAGAAGCCAATATCGCCTCCTGACCCACCGCTTGTACCTATGCATATGTCCGAAGCCAATGCCAGCATTACACCTATATCGGGCAGTTCTTTTTATTCTCAACCAAATGGAGGGAGTGTAGGACCTATCCCCAACGCGCACCTTTCCCCAAGGGGCGTACCAGTTTCTTCCCTGCCCTCCACTGGAGCCCCAATGAAGGACTTGAATTACTATAAAAGTTTGATTCAGCAACATGGAGGGGAGAGACAAGATGATCCCCCTCGGCAGCAATTCGGGAACCGTCACAACCAGCCATCAGGCACAAACCAGGAATTCTTACAGAGCCAACCATCAAGGGATGGGAAGTTCAAGATAATGAAGCCTTGCATATATTTTAACAGCTCAAGAGGATGTCGACATGGAGCCAATTGCGCGTATCAGCATGACCCCATGTTCCAGCAGAGAAATACTAGCGTGCCCGAAATGCCTAGCTCTAAGAGAACAAAAGTTGATAGAGAAATCAGCAGTTAA 1317 47.3 MRGLHEGKRVSWASDLNLRQVRLFLSEDCPSEVGLGAQDHLQAKASWLLHSTGLGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPKFVLNLMWRVVVGEESQEVDVENQREMRVLEAVYPRASAIPPNPSVVPDSERASVDDSRTPLIPITPVEDEDATTETSDYASPAAVFMSAQPSLFTSAGTSTSQHVLLNAMSSTSSLSSMAGMDLGNERDVVAAASAALSALVKSNEVGSSIDRELLVNILNNPKMIEQLVVDSGAVTSTQKPISPPDPPLVPMHMSEANASITPISGSSFYSQPNGGSVGPIPNAHLSPRGVPVSSLPSTGAPMKDLNYYKSLIQQHGGERQDDPPRQQFGNRHNQPSGTNQEFLQSQPSRDGKFKIMKPCIYFNSSRGCRHGANCAYQHDPMFQQRNTSVPEMPSSKRTKVDREISS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25854663 25859612 - ClG42_08g0160600.10 Clacu08g1606 255948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1606 438 MobiDBLite consensus disorder prediction 359 379 - -
Clacu08g1606 438 MobiDBLite consensus disorder prediction 295 330 - -
Clacu08g1606 438 MobiDBLite consensus disorder prediction 295 309 - -
Clacu08g1606 438 MobiDBLite consensus disorder prediction 417 438 - -
Clacu08g1606 438 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872(InterPro)
Clacu08g1606 438 SUPERFAMILY CCCH zinc finger 390 420 IPR036855 GO:0046872(InterPro)
Clacu08g1606 438 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 289 434 - -
Clacu08g1606 438 MobiDBLite consensus disorder prediction 130 154 - -
Clacu08g1606 438 MobiDBLite consensus disorder prediction 347 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1606 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2070 Clacu-Chr1:32445098 Clacu08g1606 Clacu-Chr8:25854663 1.80E-64 dispersed
Clacu01g2079 Clacu-Chr1:32528337 Clacu08g1606 Clacu-Chr8:25854663 6.60E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007937 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48210 None None None None Clacu TF