Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1608 ATGGAAGGGAAAAAGGGGAATAAGGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGTTAATTAGGTATGGATTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGGACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTTGAAGAAGCATTATCATTTCAGGGCAGGCCCATCAACGGTGGACATTGTTCTCGACGTGCAGGTGGATTAACGAGATTTTCAATCCTTTTCTCCATCATCTTCTCTTCTCTCTTTTGTTTCTCCACTTTTCTTCCTCTCTCCTTCTCACTGGGTTTCGTCTGCTTCTGGTTGTTATTCTTCTTTTTAGTTCCGGAATTTGTTGTGGATGATCTGATGGAGGACGAGATGGGGAAGATGGGTCAGCCATTCGAGCTGACTGGAGTGGAGCTTTTTTATTACTATCTGTCTTGGTTATTAGTTTTGGAGTCACAAATGGATGAAAGTGGACACCGTGAGAATGGACGGCACAAAGCAGATCAGTATAAGTCGGCTCAAGGTGGTCCGTGGATGATGCAGCATCAACCATCAATGAAGCAGATAATGACAATTATGGCTGAAAGAGATGCGGCCCTTCAAGAGAGGAATTTGGCCCTTTCCGAGAAGAAGGCTGCACTAGCGGAGCGAGACATGGCTTATCTACAGCGAGACGCTGCGATTGCAGAGAGAAACAATGCACTTTTGGAACGGGACAATGCCATTGCTACACTTCAGTATCGTGAAAACTCCCTAACAAATAACATGTCATGTCCACCAGGATGCCAAATTGCTAGAGGAGTGAAGCATATACATCATCCACAGCAGCAACAACACCCGCATGTGCCCCACATGAATGAGAGTAATTATAATTCCAGAGAAATGCATCCTTCAAACGATGCTTGCCCGGTATCCCCTGTTGCTTCTGAATCAACAAAGGCACGGCAAAGCAAGCGTCCAAAGGAGGGAAAGACAGTTACAACACCAAACAAGAAGGTTTCAAAAGGTCCAAGGAAGGTCAAAAGAGAGGCTGAAGACTTGAATAAGGTAATGCTGGGCAAGTCACAAGAATGGAAGGATGGAATTGGGATCATGAGTGGAGGTGATGATCTTAATAAACAGTTGGTAGTATCAAAGTCGGATTGGAAGGGACAGGATTTAGGATTGAACCAGGTTGCCTTTGATGAATCAACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTTATCAGACAATGCTACAAATGGGGAAATGGTGGATGGCAATCTGCATGTTGTACTACCACCATCTCAATGTATCCATTACCCGCTGTTCCCAACAAACGACACGCCCGACTCGGTGGTCGGAAAATGAGCGGAAGTGCTTTCAACAAGCTGCTTAGCCGCCTTGCAGCTGAAGGTCACGATCTGTCAGCTCCAGTTGATCTTAAAAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAGTAG 1581 45.35 MEGKKGNKGYVWAISAGFNAAFAAIAAKLFSYTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQGRPINGGHCSRRAGGLTRFSILFSIIFSSLFCFSTFLPLSFSLGFVCFWLLFFFLVPEFVVDDLMEDEMGKMGQPFELTGVELFYYYLSWLLVLESQMDESGHRENGRHKADQYKSAQGGPWMMQHQPSMKQIMTIMAERDAALQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLTNNMSCPPGCQIARGVKHIHHPQQQQHPHVPHMNESNYNSREMHPSNDACPVSPVASESTKARQSKRPKEGKTVTTPNKKVSKGPRKVKREAEDLNKVMLGKSQEWKDGIGIMSGGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25878172 25886016 - ClG42_08g0160800.10 Clacu08g1608 255950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1608 526 SMART GAGA_bind_2 188 526 IPR010409 -
Clacu08g1608 526 Coils Coil 246 273 - -
Clacu08g1608 526 MobiDBLite consensus disorder prediction 348 362 - -
Clacu08g1608 526 Pfam GAGA binding protein-like family 188 526 IPR010409 -
Clacu08g1608 526 PANTHER - 211 526 IPR010409 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009723(PANTHER)|GO:0043565(PANTHER)
Clacu08g1608 526 MobiDBLite consensus disorder prediction 313 347 - -
Clacu08g1608 526 MobiDBLite consensus disorder prediction 305 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1608 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0682 Clacu-Chr1:7438124 Clacu08g1608 Clacu-Chr8:25878172 7.90E-36 transposed
Clacu02g0486 Clacu-Chr2:4368423 Clacu08g1608 Clacu-Chr8:25878172 2.60E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1057 . . . . . . . . Cmo05g00297 . . . . . . . . Bhi04g00237 . . . . . . Cla08g01438 . . . Clacu08g1608 . . Cone4ag1955 Cone7ag1867 . . . . . Cme03g01897 . . . Bda01g01527 Bpe02g01723 . Bma01g00732 . . . . . Cma05g00292 Car05g00241 . Cpe11g00241 . . . . . . . . . . . . . . . Lsi08g01339 Csa02g02117 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g0682 . 301 580 BBR/BPC Transcription factor family AT2G01930 57.4 5.0e-86 314.7
Clacu08g1608 . 412 526 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Clacu02g0486 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
Clacu01g0682 . 301 580 BBR/BPC Transcription factor family AT1G68120 50.5 3.9e-72 268.5
Clacu08g1608 . 420 526 BBR/BPC Transcription factor family AT1G68120 57.0 3.1e-37 152.5
Clacu02g0486 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 1.4e-83 306.6
Clacu02g0486 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.7 6.6e-70 261.2
Clacu08g1608 . 276 526 BBR/BPC Transcription factor family AT5G42520 56.8 1.2e-76 283.5
Clacu08g1608 . 412 526 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Clacu02g0486 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48211 PF06217 GAGA_bind 3.30E-105 No_clan Clacu TF