Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1610 ATGATTTATTCGACGACTTCTTGGAGCCAAATTTTCTTTGTCACTCTTGTCATGAAACTACTAAGATGGTTGACATTGACAGTAGCATTTAGGCCATGCTCGCACGCCCGTGGTCAGGCCTTTAGGGAACTAAGGATTGAGACTTTTTCCCCCATCCCGCTGGCGGCGCACTTCTCAGAGCCGACCGTCACTCTCATCACCGGTGGGGCTAACGTGCGCACCTCACTCTCTTCTTCTTCCTTTCACCAATTCTTGAATGCCGCCATAGACGAGCTTCTTCAAGTTAGGAAGGAACTGTTTCTGATATTCGCGGGTATTTTTGGATTAGCTTCGAATTTTGTGGAGCACGGCCGAGAATGGTTGTGGAGTTACATTCCGCACGGGATTTGCTGGCTATTTATTGAATGTAGGGTTGGGAAGATGGATGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGATGGTGGGTTTGACTCTGATGATGATGAGCCCATTGGCTCTCTGCTGAAATTGAAGAGATCACGAAACTCTAAAAAGACTAAGTTGGGCGTAGATGATGGCGGTGAAAAGGACAACATAGTTGACAAGAAAGGAGCAAAATTGCCAGTGCAAGAGGACTTTGGGGGAATGGATGATACTTTAGCTAGTTTCAGAAAGAAGTTGAGGCGTCCTAAAAAGGTTAGTGGACCCGAAATTGCTAGGGAACAGAGTTCTGCTCTAAGTGTGACAGAATCTTTAGATCCATTATCTAATATGTCCAGAGGACAAGGGGATTTAGACACAAGATTGAGACCAGAAAATTGTGAATTAATGGATCGTGAAGAGTCTGATCCATCTGCAAAGATTGACATAGAAACAAGGTGTGAAGCACCTGATTTGGAATTAAAAGACATGGAGATGGGTATCCTGAGTAGGAGAAGTGCTAATTGCTCTTTCGATAAACAGTTGGATGATTCATTGTCTGCATTTGTCCAAAAGGTTCAGTCTGGTTCAACTAGGAAATCCTTGGTATCTACAACATTTAAACCAGACTGCAAGGATGAGGCTTCCGAAAATAAATTGAGTCCTTTTTCTAGAGCTGTTTCTGGGGATCATGAAACACACTCCATTGTGAGTTTTAATTCTTCGGCTAAGCTGGCACAAGTTGTCAAAAAAACAGATTCTGAACTTAATACATCCTATTTAATTTCCTGTTCACATTACACCAAAGAGAATTGTAATCCTGGTCGAGGACAATGCCATCTAGGGGTTGAATGTGACCAAGAAGAGTATCAATGCCCTCTTAATAATCACAAGAATCCTGACATGAGACCATGCATATCAAATGAAGTTGATGATGAAGACAGCAAAAACTTTACTCAATTGAGGGACAATTTCCGGGCACTGGAAAGAAAGGCATCCTGTGAAATCAAGAATGTACTAAAACATTGTTCTTGTGGCAATACAATGGTGGATAGCCATTTGGCAGTAATGGGTTCTTTTCAGGATGGGCTAGGTGAAAATCAACTTAATGAAAGTATGTGCAGTTCTTGTCATCCTCTAGAACAGGTAAATGAAAACCATGGCCTTTGTGGGGGTGTTTCCAGCAGAGATTTTTGTGATGTGGTGGCCCAAGAGACCACAGTCACTTTGTCTAAAATAACCCCAGGTGTAGATTGCGAAGGAAAAGAAAGATCACTTGTCATACATCACGATGAATTGCTGAACTCTACCAATTTCTGTGAAAGTTCTTCCAAAGAAATCCGTAGATCTACTAAAGATTTGAAGGTTTCTGATCAATCATTAGGCAGAACAACACTCTCCAATCTTCAGTTATCTGCAGGTTTCGATTCATCGAAAGTGGATAAAACTTGCAGCGACTCTGATAATTTAAATACTGGAACTGATGAGCCGAATAATGAAGGTGGTTCTGTGCAAAAGGAAAATGCTCTAATCTCTAGGATTTCAGATTCAACTGCTGTTCAATCTCACAGATCCGAAAAATCTGGGGCAACTGCTTCTGGACCAAATTATCCAGAGGTTTGTCCTAGTGGAAATTTCAGCATGATATCAGATAGTCAACCGGCCAAGGCTTCAGTGGAGATAGATGGTCCAAATAATATACTTACTGGTAAAGAGGTTAAGGTATCTTCTCTTGGGTCTTTCACTCCAGATGATAATGACCTTGAGGATGTAATATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACGTGTAGCACGCAAGACAAAGAAGCCTAGACATGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGATTAGTGAGCGTGCAGTTGATGGCGACCATTCTTTCAGATCAAGAAAGGATTCTACATCATCGACTTTTACAGAGGCTGAAACTGGTGGTAGAGCTGCAGTGTCTGCAGGGCTTAAGGCACATGCAGTTGGTCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACATAGCATGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACACGCATTTTGCATCTCGTTGACTGTGGGGTCACTGATACTCCCTCTATGGATGAACCACCACGTTTTCCCCTTATTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCTTCTGAGAAAGCCGAATCAGAATCTGACATTAAATATGATCATGAACTGGGAGAGAAGAAGGTTGGAGATGTTAGTGTTGCTTCAGCTGCTGGTTCTGAAGAAGGGGTTTCTGTCATGGTAAAAAATTCTGATGCTTCTAATGCAGAGAACGATGTTTCAGCTGGCTGTGAAGTAATATTGGAAGATGCTGAAGGAAGAGACCCCGTGATTGTAAATAATTTGGATTTACCAAAATCAGTGGAACATGAACAAGAATTGGTACATGACGTGGAGTATGGTACTCCTGATTCTATACCGGTAAAATTGGTTGGTGATGTTCCAGGTAAAGCTGCCTCACATTTAACTAATCATTCAAGAAATGGTTGGCACCCAATCCACTCCTCTGATGAGTGTGTAGGAGGTGATCAACAACAGCAGAGTAATTCTGATGTCAGAAAGAAAGTAATTGTTATTGGAGCTGGTCCTGCTGGCTTAACTGCCGCAAAGCACTTGCATCGTCAGGGCTTTGCTGTCACCATACTTGAAGCCAGGAACAGGTTAGGAGGTCGTGTTCATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCCAGCGAAAGAAGACCCGATCCTTCCTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTATTAAATAGTGACTGTCCCCTCTATGACATCATTACATGCAAAAAAGTTCCAGTAGACATGGACGAGGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGGCCATGTCTCTCGAGGAGGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGAGGTATGGATGTTTGTTCTGAGGAAGAGGTTTTGAGTCCCTTTGAGAGGAGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAATTGGAATCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCGATGTTCACCTAAATCATGTTGTGGCTGATATTTCTTACAGCACCGATGACACTGGGTTTAATGGGAATCAGTGTGCAAAGGTAAAAGTTACCACAACCAATGGTTGCATGTTTCTAGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGCTTGAAAGCAGAAACTATTAAATTTTCTCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGGTTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCAGTTCTCATAGCACTAGTGGTTGGTCAGGCTGCTGTGGAGAGGCAATTTATGAGCTCTTCCGATAATGTAAGCCATGCATTAATGGTCCTTCGGAAACTTTTTGGAGAAGCTATGGTACCTGATCCAGTTGCATCTGTTGTAACTGATTGGGGAAGAGATCCGTTTAGCTATGGTGCTTACTCATATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCAAGACCTGTTGGAAACTGTTTGTTTTTTGCTGGTGAAGCTACTTGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTACGCATGATTGATGTACTGAGTGATGGTTATGATTTCACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAAAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACATAATTACAAGACTCGATGCTGTTAAGCTCTCTGATGCTCTTTACAAAAATTCTTTGGATGGTGCGATTTTGACCACAGAAGCTTTACTACAAGATTTGTTTTTTAGTGCAAAAACCACAGCAGGGAGATTGCAAGTGGCAAAAGAATTGCTGAATCTCCCTGCTGAGACGTTGAAGTCCTTTGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTTTGGACTCGATGGGGAAGGATGGGACTCAACTTCTTCGGCAATGTGTTCGTATTCTTGTGTTGGTTTCAACAGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATCCGTGCTATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAGGCTGCTAATGGGGGTTTAAAACTCTCTAAGTCAGTTTCTGCTGTAGAACTATTGAAGAGGAAATCTAATAAAGATTCTTCTTCTGGGAAACCTCCTTTGCATGCATACAACAGCACACTGGATAGTAGGGTCAATTTGCTGACTTCTGCATCAGCTGCAATTCCCTTGCAGTCTGATGTCAATATGAAAAATGATAATAGCAAACAATTAAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCGAGGTCAAGGGGCTCATTCGGAAAGCAGGATGCAGAGATGGAAGACAACAACATTGCTATGACAGAAGAAGAGCAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCCGCACTTGCAGCTGCGAAGGCATATGCATCTTCTGAAGCCAAGAGTGCGATGCAGCTCCCAAAAATCCCCTCCTTTCACAAATTTGCTAGACGGGAGCATTATGCTCAAATGGATGAGTGTGAGTATAAGAAGAAGTTGTCTGGCAGTGTGCTTGGAAGACAAGATTGTATATCCGAAATAGATTCAAGAAACTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCTGCAGATAACCTTTCACAAAGAAGCCATTCGAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCTGGTGAAAGTGCTCCTGTGGATAGTAGTATATACACAAAAGCATGGGTTGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCTATTGAGAGATGGCGCACTCAAGCAGCTGCAGCTCATGTAAATGATGAGGAGGATTCAAACACAAATTGGCATAAACCCACATGGAATAGTGATCAAGTAGCGAATGAGAGCTCAATATCACAAGTGACGATCAACAAGGAGCCCATAAGAAACAATCATCGTGGGGCTGACAGAATTAAGCAGGCTGTTGTTGATTATGTTGCTTCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATCGACAAGGATGGATACAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGATTCGTGCCTTTGTAGACAAATTAATAGAGAGGCATATGGCTACGAAGCCAGTAACGAAGTCGTGA 6234 42.54 MIYSTTSWSQIFFVTLVMKLLRWLTLTVAFRPCSHARGQAFRELRIETFSPIPLAAHFSEPTVTLITGGANVRTSLSSSSFHQFLNAAIDELLQVRKELFLIFAGIFGLASNFVEHGREWLWSYIPHGICWLFIECRVGKMDGDNKKSGFRKRTKPKDGGFDSDDDEPIGSLLKLKRSRNSKKTKLGVDDGGEKDNIVDKKGAKLPVQEDFGGMDDTLASFRKKLRRPKKVSGPEIAREQSSALSVTESLDPLSNMSRGQGDLDTRLRPENCELMDREESDPSAKIDIETRCEAPDLELKDMEMGILSRRSANCSFDKQLDDSLSAFVQKVQSGSTRKSLVSTTFKPDCKDEASENKLSPFSRAVSGDHETHSIVSFNSSAKLAQVVKKTDSELNTSYLISCSHYTKENCNPGRGQCHLGVECDQEEYQCPLNNHKNPDMRPCISNEVDDEDSKNFTQLRDNFRALERKASCEIKNVLKHCSCGNTMVDSHLAVMGSFQDGLGENQLNESMCSSCHPLEQVNENHGLCGGVSSRDFCDVVAQETTVTLSKITPGVDCEGKERSLVIHHDELLNSTNFCESSSKEIRRSTKDLKVSDQSLGRTTLSNLQLSAGFDSSKVDKTCSDSDNLNTGTDEPNNEGGSVQKENALISRISDSTAVQSHRSEKSGATASGPNYPEVCPSGNFSMISDSQPAKASVEIDGPNNILTGKEVKVSSLGSFTPDDNDLEDVISAPGSEKDLKLSALRVARKTKKPRHDDMAYEGDIDWEVLISERAVDGDHSFRSRKDSTSSTFTEAETGGRAAVSAGLKAHAVGLLEKIKFKDVLKRKGGLQEYIACRNQILGLWCKDVTRILHLVDCGVTDTPSMDEPPRFPLIREIYAFLNLRGYINAGIASEKAESESDIKYDHELGEKKVGDVSVASAAGSEEGVSVMVKNSDASNAENDVSAGCEVILEDAEGRDPVIVNNLDLPKSVEHEQELVHDVEYGTPDSIPVKLVGDVPGKAASHLTNHSRNGWHPIHSSDECVGGDQQQQSNSDVRKKVIVIGAGPAGLTAAKHLHRQGFAVTILEARNRLGGRVHTDRSSLSVPVDLGASIITGVEADVASERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPVDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARGMDVCSEEEVLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLDVHLNHVVADISYSTDDTGFNGNQCAKVKVTTTNGCMFLGDAVLITVPLGCLKAETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQFMSSSDNVSHALMVLRKLFGEAMVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSDGYDFTAEVEAMEAAQRQSECENDEVGDIITRLDAVKLSDALYKNSLDGAILTTEALLQDLFFSAKTTAGRLQVAKELLNLPAETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSAVELLKRKSNKDSSSGKPPLHAYNSTLDSRVNLLTSASAAIPLQSDVNMKNDNSKQLKLEMENSSKSDISSSRSRGSFGKQDAEMEDNNIAMTEEEQAAFAAAEAARAAALAAAKAYASSEAKSAMQLPKIPSFHKFARREHYAQMDECEYKKKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVNDEEDSNTNWHKPTWNSDQVANESSISQVTINKEPIRNNHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPVTKS 2077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25893854 25907442 + ClG42_08g0161000.10 Clacu08g1610 255952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1610 2077 SUPERFAMILY FAD/NAD(P)-binding domain 1037 1501 IPR036188 -
Clacu08g1610 2077 PANTHER FLAVIN MONOAMINE OXIDASE 1028 1501 IPR050281 GO:0016491(PANTHER)
Clacu08g1610 2077 ProSiteProfiles SWIRM domain profile. 798 898 IPR007526 GO:0005515(InterPro)
Clacu08g1610 2077 SUPERFAMILY Homeodomain-like 800 894 IPR009057 -
Clacu08g1610 2077 Gene3D - 1040 1497 IPR036188 -
Clacu08g1610 2077 MobiDBLite consensus disorder prediction 616 677 - -
Clacu08g1610 2077 MobiDBLite consensus disorder prediction 1749 1770 - -
Clacu08g1610 2077 Gene3D - 1127 1454 - -
Clacu08g1610 2077 MobiDBLite consensus disorder prediction 1751 1766 - -
Clacu08g1610 2077 Pfam Flavin containing amine oxidoreductase 1048 1499 IPR002937 GO:0016491(InterPro)
Clacu08g1610 2077 MobiDBLite consensus disorder prediction 229 265 - -
Clacu08g1610 2077 MobiDBLite consensus disorder prediction 145 166 - -
Clacu08g1610 2077 MobiDBLite consensus disorder prediction 1003 1032 - -
Clacu08g1610 2077 Gene3D - 798 901 IPR036388 -
Clacu08g1610 2077 Pfam SWIRM domain 815 888 IPR007526 GO:0005515(InterPro)
Clacu08g1610 2077 MobiDBLite consensus disorder prediction 238 261 - -
Clacu08g1610 2077 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1595 1680 IPR035441 -
Clacu08g1610 2077 SUPERFAMILY FAD-linked reductases, C-terminal domain 1337 1448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1610 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1610 Clacu-Chr8:25893854 Clacu11g2027 Clacu-Chr11:31241307 4.80E-85 dispersed
Clacu08g1610 Clacu-Chr8:25893854 Clacu07g1081 Clacu-Chr7:25370829 1.90E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48212 PF01593 Amino_oxidase 5.80E-99 CL0063 Clacu TR