Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1612 ATGTCGTCAACGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGTGCCGCTGCGGCCCTTGTTTTCTCTTGTATGGGAGCCGCTTACGGGACGGCAAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTTATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCAGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGAATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATTGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCTCTTTATGGACTTATTGTTGGTATTATTCTCTCTTCTCGAGCTGGTCAGTCAAGAGCTGATTAA 498 49.4 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25913956 25915758 + ClG42_08g0161200.10 Clacu08g1612 255954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1612 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Clacu08g1612 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Clacu08g1612 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Clacu08g1612 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Clacu08g1612 165 Gene3D - 11 162 IPR035921 -
Clacu08g1612 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 159 - GO:0016021(PANTHER)
Clacu08g1612 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1612 Clacu-Chr8:25913956 Clacu11g1754 Clacu-Chr11:28716475 3.00E-75 dispersed
Clacu08g1611 Clacu-Chr8:25910172 Clacu08g1612 Clacu-Chr8:25913956 1.40E-75 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1612 K02155 - mdm:114824771 287.73