Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1612 ATGTCGTCAACGTTCAGCGGTGATGAAACGGCACCCTTCTTTGGCTTTCTCGGTGCCGCTGCGGCCCTTGTTTTCTCTTGTATGGGAGCCGCTTACGGGACGGCAAAGAGCGGGGTTGGTGTGGCGTCAATGGGAGTTATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCAGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGAATTAACCCTAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATTGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAACCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCCGAAGCACTTGCTCTTTATGGACTTATTGTTGGTATTATTCTCTCTTCTCGAGCTGGTCAGTCAAGAGCTGATTAA 498 49.4 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25913956 25915758 + ClG42_08g0161200.10 Clacu08g1612 255954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1612 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Clacu08g1612 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Clacu08g1612 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Clacu08g1612 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu08g1612 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Clacu08g1612 165 Gene3D - 11 162 IPR035921 -
Clacu08g1612 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 159 - GO:0016021(PANTHER)
Clacu08g1612 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1612 K02155 - - mdm:114824771 287.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1612 Clacu-Chr8:25913956 Clacu11g1754 Clacu-Chr11:28716475 3.00E-75 dispersed
Clacu08g1611 Clacu-Chr8:25910172 Clacu08g1612 Clacu-Chr8:25913956 1.40E-75 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1050 . . . . . . . . Cmo05g00293 Cmo12g00375 . . . Car12g00401 . . Cpe07g00380 Bhi04g00233 . . . Hepe10g0130 . . Cla08g01441 Cam08g1922 Cec08g1497 . Clacu08g1612 . Cre08g1398 . . Cone17ag1386 Cone20ag0095 . . . Cme03g01900 Blo17g00753 Blo18g00785 Bda08g01232 Bda01g01524 Bpe02g01721 Bpe05g00130 Bma01g00735 Bma05g00155 . . . Cma12g00425 Cma05g00287 Car05g00237 . Cpe11g00238 . . . . . . . . . . . . . . . Lsi08g01343 Csa02g02112 Chy03g01404 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu09g0169 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu05g1557 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 8.7e-76 280.4
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28710 95.0 2.4e-194 674.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102