Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1614 ATGAACAAAATAATGGGAGGTGAGGAGCTAATACAGGGCGTTATTCAAGATTCAAATGGTCTAGAAGAAACAATTCGTGTTTCTATTAGGTTAAGACCATTGAACGATAAGGAATTGGCTAAAAACGACTCGTCGGATTGGGAATGCATCAACAATAATTCTGTCGTGTTCAGAAGTACTTTACCGGAACGCTCTATGTTTCCCCAATCTTACACATTTGATAGAGTATTTGGAGTTGACAGTACAACGAAGCAAGTTTATGAAGAAGGGGCCAAAGAAGTTGTTCTTTCTGTGGTCAATGGGATTAACTCAACAATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACTTTCACCATGAATGGAGTCACTCAATATTCTGTGGCAGACATTTATAATTACATGGAGTCGCATCGAGACAGAGAGTTTGTGCTGAAGTTTTCAGCGATTGAGATATACAATGAAGCTGTTAGAGATCTCCTTAGCTTAGAAAATATCCCACTTAGACTGCTTGATGATCCTGAGAAAGGAACTGTTGTTGAGAAACTTACAGAGGAGACACTGAAAGACAGGAATCATCTCCAGGAGCTTCTTTCCTTCTGTGAAGTTCAAAGAAAGATAGGGGAGACATCTCTTAACGAAACCAGCTCCAGATCCCATCAAATCCTAAGACTGACAATTGAAAGCTCCGCTCGCAAATACAAGAAGTCTGAAAGTTCAAGCACTCTCACCGCTACAGTGAATTTTGTTGATCTTGCGGGAAGTGAACGTGCTTCTCAAACAAATTCTGCTGGTACAAGACTGAAAGAAGGTTGTCACATCAATCGTAGTTTGCTGACTTTGGGAACTGTTATTCGCAAATTAAGCAAAGGAAGGAACGGACATATACCTTATAGAGATTCCAAGTTAACACGCATACTGCAGAATTCTCTAGGTGGAAATGGTCGAACGGCTATCATTTGTACTATGAGTCCTGCACGTAGCCATGTCGAACAATCAAGAAATACATTGCTATTCGCTACTTGTGCAAAAGAGGTGAGTACAAATGCACAAGTGAATGTGGTAGTTTCAGATAAGGCATTGGTGAAGCAGTTGCAAAAAGAATTGGCTAGACTTGAGAGCGAGATGAAGAGCTTAAAACCACTTCCTGTCAAAGGTGATTCTACTTCATTATTGAAAGAGAAAGAACTTCTAATTGAACAGATGGACAAAGAGATAAAGGAATTGACTCGGCAACGTGATCTTGCTCAATATCGAATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCTAAGTGAAAATACAGTACAAACAATACCAGATCTAGTTGACCTAGATCTAGATCTACGTTCTGATGACTCAAGTCTCAAAACTTTTGACACATTTACTGCACATGAAGAGAATAGCCCTCACAAGATTGATCCTCTATTCACTATGAGTCATGAGGACAATTTTCTACTGGATAGCAGTACTCCTGAATTGGCTGGACCTGATCCTTATCAGGACTGGGAAGAGATTGCTCAACGTGTTCATGCAAATTCTGAAGATGGGTGTAAGGATGTTCAATGCATTGAACTGGAAGAATCAAAAGAATCAAAAGAATCACTAAATGAAAATGGTGATTTAACTTTAGCTAGACTGGAAGACAATGAAGGACAGATGATTAGTAGTTTTGGCACTAATCAAGCGACATCCCCACAAAGGAAGAATAAGGAGATAATTACAAACAAAGATTATACTTGTGATGGTTTTATGCCAAAAACAGCTGAGATGCAGAAAACATTGAATTGTATTTTAAATCTTTATCCTTCTGAGCAATCTTTCAGCTCAATTGAAGCAGCGAAATCTCGTTTTCAGAACTTAAAGTTGGCCAGAAGCAAAAGTTGTTTGACTGTTCTAATGACCATCCCACCTTCTACTTTGATTGAAAAGGCAGAAGAGGATAAGAAACCTCGAATCGTTGGATCTGAAGTGAACTTCTCTGGACAAGCAGAAGGTAGTCGGAGAAAGCGCGGTTTAAGCTGTGGGAATTTGGAGGAAAATTTGGACACCAAAGACTCACATTCTGTATGTAGTCACTGTTCGGAAGCCAAACCTTTACAAATAATAGATGAAGATGATGATGATAATACTAGTGTTCTCAACTTTTCTACTGGAAAGAAAGGAAAGGGCAAAAATCGGATAAAGAAGCGATCTGGTTCGAGGCTGGGGAGGGTCTCTAAAAAGGAAGAACCTAAAGAAACCACACAAGAAGTTAACATGGAAGAGGCACAAGAACTTCAGGCTCATTCTGAGTGGGTTCTAGAGTTCCAAGGTCAACAAAGAGATATAATTGAGCTTTGGGATGCTTGCAATGTACCATTGGTCCACAGATCTTATTTCTTCATCCTTTTTAAAGGAGACCCTTCTGATGCTGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGGGAAGCCATTTCTCGATCAATCAATGCATCGGGAAGGAGCGACACCATCACGCAAGCTTCGAGCTTGAAGGCTCTAAATCGCGAGAGAGAAATGTTGGCGAGGCGAATGAAAAAGAAGTTCTCAGTGAAAGAAAGAGACGCCCTTTACCAGAAGTGGGGTATCGACTTGAAGACGAAGCAACGAAGCATACAATTGGCACGAATGCTTTGGTCGAGAACAAAGGATTTCGACCATATACACGAAAGTGCTGCCCTTGTGGCAAAGCTCATTGGATTTGTGGAACCTTCTCAGACCAGTTTGGAGAATTCGAAGCGATGA 2787 40.22 MNKIMGGEELIQGVIQDSNGLEETIRVSIRLRPLNDKELAKNDSSDWECINNNSVVFRSTLPERSMFPQSYTFDRVFGVDSTTKQVYEEGAKEVVLSVVNGINSTIFAYGQTSSGKTFTMNGVTQYSVADIYNYMESHRDREFVLKFSAIEIYNEAVRDLLSLENIPLRLLDDPEKGTVVEKLTEETLKDRNHLQELLSFCEVQRKIGETSLNETSSRSHQILRLTIESSARKYKKSESSSTLTATVNFVDLAGSERASQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAQVNVVVSDKALVKQLQKELARLESEMKSLKPLPVKGDSTSLLKEKELLIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKLSENTVQTIPDLVDLDLDLRSDDSSLKTFDTFTAHEENSPHKIDPLFTMSHEDNFLLDSSTPELAGPDPYQDWEEIAQRVHANSEDGCKDVQCIELEESKESKESLNENGDLTLARLEDNEGQMISSFGTNQATSPQRKNKEIITNKDYTCDGFMPKTAEMQKTLNCILNLYPSEQSFSSIEAAKSRFQNLKLARSKSCLTVLMTIPPSTLIEKAEEDKKPRIVGSEVNFSGQAEGSRRKRGLSCGNLEENLDTKDSHSVCSHCSEAKPLQIIDEDDDDNTSVLNFSTGKKGKGKNRIKKRSGSRLGRVSKKEEPKETTQEVNMEEAQELQAHSEWVLEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDAVYMEVELRRLFFIREAISRSINASGRSDTITQASSLKALNREREMLARRMKKKFSVKERDALYQKWGIDLKTKQRSIQLARMLWSRTKDFDHIHESAALVAKLIGFVEPSQTSLENSKR 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25929034 25936045 - ClG42_08g0161400.10 Clacu08g1614 255956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1614 928 Coils Coil 355 382 - -
Clacu08g1614 928 MobiDBLite consensus disorder prediction 719 755 - -
Clacu08g1614 928 FunFam Kinesin-like protein 18 377 - -
Clacu08g1614 928 Gene3D Kinesin motor domain 15 377 IPR036961 -
Clacu08g1614 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 380 IPR027417 -
Clacu08g1614 928 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu08g1614 928 SMART kinesin_4 22 354 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu08g1614 928 CDD KISc_CENP_E 24 346 - -
Clacu08g1614 928 MobiDBLite consensus disorder prediction 726 740 - -
Clacu08g1614 928 PANTHER CENTROMERE PROTEIN E 21 921 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Clacu08g1614 928 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu08g1614 928 MobiDBLite consensus disorder prediction 741 755 - -
Clacu08g1614 928 Pfam Domain of unknown function (DUF3490) 773 922 IPR021881 -
Clacu08g1614 928 Coils Coil 392 426 - -
Clacu08g1614 928 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu08g1614 928 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu08g1614 928 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu08g1614 928 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu08g1614 928 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1614 K11498 - - csv:101212680 1558.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0829 Clacu-Chr7:20968972 Clacu08g1614 Clacu-Chr8:25929034 4.20E-116 dispersed
Clacu08g1614 Clacu-Chr8:25929034 Clacu11g0160 Clacu-Chr11:1238578 2.00E-131 dispersed
Clacu11g0545 Clacu-Chr11:5130470 Clacu08g1614 Clacu-Chr8:25929034 6.70E-76 wgd
Clacu02g0496 Clacu-Chr2:4529874 Clacu08g1614 Clacu-Chr8:25929034 9.30E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32