Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1620 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAATCATCAACAACAACAACCAAATCCTTCTCTTACAAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCGAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTGCCGCCGCTGTTACCGCTGCCACCGCCTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCCGTGAACATTGGTGGTCACGTGTTCAAAGGAATTCTCTACGACCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGTACCAACCCCTCCGCTGCCGCCGCCGCCGCTCCGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1026 52.63 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNHQQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTAAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAAAAAAPLLDPSIYPAPLNAFMAGTQFFPPSRS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25978250 25979669 + ClG42_08g0162000.10 Clacu08g1620 255962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1620 341 NCBIfam LRP1 C-terminal domain 217 265 IPR006511 -
Clacu08g1620 341 Pfam Domain of unknown function (DUF702) 111 266 - -
Clacu08g1620 341 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Clacu08g1620 341 MobiDBLite consensus disorder prediction 271 303 - -
Clacu08g1620 341 MobiDBLite consensus disorder prediction 277 303 - -
Clacu08g1620 341 MobiDBLite consensus disorder prediction 167 186 - -
Clacu08g1620 341 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 335 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Clacu08g1620 341 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2886 Clacu-Chr5:36054851 Clacu08g1620 Clacu-Chr8:25978250 2.30E-28 dispersed
Clacu08g1620 Clacu-Chr8:25978250 Clacu09g1418 Clacu-Chr9:19681662 2.10E-70 dispersed
Clacu01g2063 Clacu-Chr1:32405716 Clacu08g1620 Clacu-Chr8:25978250 1.90E-60 wgd
Clacu05g2030 Clacu-Chr5:29263007 Clacu08g1620 Clacu-Chr8:25978250 1.20E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48214 PF05142 DUF702 5.10E-68 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1620 K27807 - csv:101213154 538.88